BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0568400 Os04g0568400|AK103546
(698 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0568400 Quinoprotein amine dehydrogenase, beta chain-l... 1242 0.0
Os03g0115400 WD40-like domain containing protein 540 e-153
Os04g0417800 WD40-like domain containing protein 311 1e-84
Os04g0678300 WD40-like domain containing protein 310 3e-84
Os11g0187000 WD40-like domain containing protein 301 7e-82
Os02g0539900 WD40-like domain containing protein 275 7e-74
Os02g0638900 WD40-like domain containing protein 207 2e-53
Os12g0178633 Quinonprotein alcohol dehydrogenase-like domai... 206 4e-53
Os04g0529400 WD40-like domain containing protein 132 8e-31
Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding ... 76 7e-14
Os07g0572000 WD40-like domain containing protein 76 1e-13
Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3... 70 6e-12
>Os04g0568400 Quinoprotein amine dehydrogenase, beta chain-like domain containing
protein
Length = 698
Score = 1242 bits (3214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 609/698 (87%), Positives = 609/698 (87%)
Query: 1 MEGCQLVARCXXXXXXXRMEVEEEAFFDTREEXXXXXXXXXXXWSGGLDSVRQRRERFMR 60
MEGCQLVARC RMEVEEEAFFDTREE WSGGLDSVRQRRERFMR
Sbjct: 1 MEGCQLVARCSSSSSSSRMEVEEEAFFDTREELLPPSPAAALPWSGGLDSVRQRRERFMR 60
Query: 61 SMGLERSPSLRQADFXXXXXXXXXXXXXXXXXXIGRWSSQSDENXXXXXXXXXXXXXXYD 120
SMGLERSPSLRQADF IGRWSSQSDEN YD
Sbjct: 61 SMGLERSPSLRQADFADVVGDVEEEGEVAAEAEIGRWSSQSDENECSMSSWSTEETTSYD 120
Query: 121 DGASDDNXXXXXXXXXXXXXXXXFIQRLMSRNGKPSGAPKTIDRRRNGWLRRLGVSACVV 180
DGASDDN FIQRLMSRNGKPSGAPKTIDRRRNGWLRRLGVSACVV
Sbjct: 121 DGASDDNSVSGSGKASRSFSSLSFIQRLMSRNGKPSGAPKTIDRRRNGWLRRLGVSACVV 180
Query: 181 XXXXXXXXXXXXXXXEQIGAGRYERIKVHSYRKRSKELSAVYQGQVIKAHDGAILTMKFS 240
EQIGAGRYERIKVHSYRKRSKELSAVYQGQVIKAHDGAILTMKFS
Sbjct: 181 DSGAADEASTSSSDSEQIGAGRYERIKVHSYRKRSKELSAVYQGQVIKAHDGAILTMKFS 240
Query: 241 PDGQLLATGGEDGVVRVWAVMQSEDCKIPLDDPSCVYLKARRKYGLAPVNAESEKKSKIN 300
PDGQLLATGGEDGVVRVWAVMQSEDCKIPLDDPSCVYLKARRKYGLAPVNAESEKKSKIN
Sbjct: 241 PDGQLLATGGEDGVVRVWAVMQSEDCKIPLDDPSCVYLKARRKYGLAPVNAESEKKSKIN 300
Query: 301 GLKKSDSACIVVPTMVFQISEEPVHEFRGHSGDVLDLSWSSDKHLLSASTDKTVRMWEIG 360
GLKKSDSACIVVPTMVFQISEEPVHEFRGHSGDVLDLSWSSDKHLLSASTDKTVRMWEIG
Sbjct: 301 GLKKSDSACIVVPTMVFQISEEPVHEFRGHSGDVLDLSWSSDKHLLSASTDKTVRMWEIG 360
Query: 361 YANCIRVYPHSNFVTCVQFNLADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVC 420
YANCIRVYPHSNFVTCVQFNLADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVC
Sbjct: 361 YANCIRVYPHSNFVTCVQFNLADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVC 420
Query: 421 YRPXXXXXXXXTITGNCRFYEISDNLLKLETQIALNGKKKSSLKRITGFQFCPSNPSKLM 480
YRP TITGNCRFYEISDNLLKLETQIALNGKKKSSLKRITGFQFCPSNPSKLM
Sbjct: 421 YRPGGKGVVVGTITGNCRFYEISDNLLKLETQIALNGKKKSSLKRITGFQFCPSNPSKLM 480
Query: 481 VTSADSKIRILDGTNVIQNYSGLRSGSCQLSATFTPEGQHIISASEDSNVYVWSHENQYE 540
VTSADSKIRILDGTNVIQNYSGLRSGSCQLSATFTPEGQHIISASEDSNVYVWSHENQYE
Sbjct: 481 VTSADSKIRILDGTNVIQNYSGLRSGSCQLSATFTPEGQHIISASEDSNVYVWSHENQYE 540
Query: 541 CACKQAKTTQTSEHFRSNNAAIAIPWNGTKPRSPVPLSSQILPPQGDTFWSMSKAIKYNS 600
CACKQAKTTQTSEHFRSNNAAIAIPWNGTKPRSPVPLSSQILPPQGDTFWSMSKAIKYNS
Sbjct: 541 CACKQAKTTQTSEHFRSNNAAIAIPWNGTKPRSPVPLSSQILPPQGDTFWSMSKAIKYNS 600
Query: 601 SLCGKDSSIKKIVSTPAAPGIFNLNQEFFIESSCKSSATWPEEMLPSTTASVNLDESQFK 660
SLCGKDSSIKKIVSTPAAPGIFNLNQEFFIESSCKSSATWPEEMLPSTTASVNLDESQFK
Sbjct: 601 SLCGKDSSIKKIVSTPAAPGIFNLNQEFFIESSCKSSATWPEEMLPSTTASVNLDESQFK 660
Query: 661 LLRNCFQGTSNSWGQVIVTAGWDGRIRYFQNFGLPVHQ 698
LLRNCFQGTSNSWGQVIVTAGWDGRIRYFQNFGLPVHQ
Sbjct: 661 LLRNCFQGTSNSWGQVIVTAGWDGRIRYFQNFGLPVHQ 698
>Os03g0115400 WD40-like domain containing protein
Length = 746
Score = 540 bits (1391), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/532 (50%), Positives = 357/532 (67%), Gaps = 11/532 (2%)
Query: 174 GVSACVVXXXXXXXXXXXXXXXEQIGAGRYERIKVHSYRKRSKELSAVYQGQVIKAHDGA 233
G+ CVV + +G+ +R+KV Y+KRSKELSAVY+GQ IKAH+GA
Sbjct: 217 GIRGCVVDVEEDDETNSTSSSSCRSCSGKVDRVKVRHYKKRSKELSAVYRGQDIKAHEGA 276
Query: 234 ILTMKFSPDGQLLATGGEDGVVRVWAVMQSE---DCKIPLDDPSCVYLKARRKYGLAPVN 290
I+TMKFS DGQ LATGGEDGVVRVW V++ E + DDPSCV+ LAPVN
Sbjct: 277 IVTMKFSSDGQYLATGGEDGVVRVWRVVEGERPNELDFAEDDPSCVFFTVNENSELAPVN 336
Query: 291 AESEKKSK--INGLKKSDSACIVVPTMVFQISEEPVHEFRGHSGDVLDLSWSSDKHLLSA 348
+ KSK N +D AC+V+P F +S+EPVHEF GH +LDLSWS ++ LLS+
Sbjct: 337 SSEGSKSKHYKNSKVSTDPACVVIPHRTFALSQEPVHEFYGHDDAILDLSWSKNRDLLSS 396
Query: 349 STDKTVRMWEIGYANCIRVYPHSNFVTCVQFNLADENLFISGSIDGKIRVWDITRSSVVD 408
S DKTVR+W++G +C++V+ H+N+VTCVQF+ +N FISG IDG +R+WD+ R VVD
Sbjct: 397 SMDKTVRLWQVGCNSCLKVFSHTNYVTCVQFHPTSDNYFISGCIDGLVRIWDVRRCQVVD 456
Query: 409 WVDIRDIVTAVCYRPXXXXXXXXTITGNCRFYEISDNLLKLETQIALNGKKKSSLKRITG 468
W D ++I+TAVCYRP TITGNCR Y+ S+N L+LE+Q+ALNG+KKS LKRI G
Sbjct: 457 WADTKEIITAVCYRPDGKAAVVGTITGNCRHYDASENHLELESQVALNGRKKSPLKRIIG 516
Query: 469 FQFCPSNPSKLMVTSADSKIRILDGTNVIQNYSGLRSGSCQLSATFTPEGQHIISASEDS 528
FQ+CPS+P KLMVTS DS++RILDG +VI NY GLRS S Q++A+FTP+G HIISAS+DS
Sbjct: 517 FQYCPSDPKKLMVTSGDSQVRILDGLHVISNYKGLRSSS-QVAASFTPDGDHIISASDDS 575
Query: 529 NVYVWSHENQYECACKQAKTTQTSEHFRSNNAAIAIPWNGTKPRSPVPLSSQILPPQGDT 588
++Y+W++ NQ KT ++EHF ++ AIAIPWN ++ R+ + L+ I Q +
Sbjct: 576 SIYMWNYANQIAPVTNHVKTVWSNEHFSCHDVAIAIPWNASQTRNSISLACSITSSQQEV 635
Query: 589 FWSMSKAIKYNSSLCGKDSSIKKIVSTPAAP-GIFNLNQEFFIESSCKSSATWPEEMLPS 647
+++SS C S P G F L+ FF ES+ + SATWPEE LPS
Sbjct: 636 LDEFHN--EHDSSSCSHTEDSPDGDSLYQLPSGNFTLSSAFFAESAPRGSATWPEEQLPS 693
Query: 648 -TTASVNLDESQFKLLR-NCFQGTSNSWGQVIVTAGWDGRIRYFQNFGLPVH 697
+T L +SQ+K L+ +C +++WGQVIV AGWDG IR FQN+GLPV
Sbjct: 694 NSTTQSTLRKSQYKFLKASCQNAATHAWGQVIVAAGWDGYIRSFQNYGLPVQ 745
>Os04g0417800 WD40-like domain containing protein
Length = 680
Score = 311 bits (796), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 192/499 (38%), Positives = 273/499 (54%), Gaps = 56/499 (11%)
Query: 205 RIKVHSYRKRSKELSAVYQGQVIKAHDGAILTMKFSPDGQLLATGGEDGVVRVWAVMQSE 264
R KV +K++ E SAV+ GQ I+AH G I MKFSP G LATGGED +VR+W +M+ E
Sbjct: 229 RTKVQHRKKKTMEFSAVHLGQEIQAHKGLIKVMKFSPSGWYLATGGEDCIVRIWQIMEVE 288
Query: 265 DCKIPLDDPSCVYLKARRKYGLAPVNAESEKKSKINGLKKS-----DSACIVVPTMVFQI 319
++ G P N + KI +K + A VVP F+I
Sbjct: 289 -------------ASSKLHGGDNPQNYDD----KITIIKTELGRGKNHALAVVPKKGFRI 331
Query: 320 SEEPVHEFRGHSGDVLDLSWSSDKHLLSASTDKTVRMWEIGYANCIRVYPHSNFVTCVQF 379
SE P+HEF+GH+ D+LD++WS +LL++S DK VR+W++G C+ ++ H ++VTCVQF
Sbjct: 332 SETPLHEFQGHTDDILDMAWSESDYLLTSSKDKMVRLWKVGCDGCLGLFKHKDYVTCVQF 391
Query: 380 NLADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVCYRPXXXXXXXXTITGNCRF 439
N DE FISGSIDGK+RVWD VVDW D R I+TA+ Y+P T +G CRF
Sbjct: 392 NPIDERYFISGSIDGKVRVWDALDKRVVDWTDTRKIITALSYQPDGKGFIVGTTSGECRF 451
Query: 440 YEISDNLLKLETQIALNGKKKSSLKRITGFQFCPSNPSKLMVTSADSKIRILDGTNVIQN 499
Y+ S ++L+ ++ + G KKS++ R+ Q S+ S++ +TS SKIR+ DG ++IQ
Sbjct: 452 YDQSGENIQLDKELFMQG-KKSAVHRVNSLQSRSSDSSRITITSTGSKIRVADGVDIIQK 510
Query: 500 YSGLRSGSCQLSATFTPEGQHIISASEDSNVYVWSHENQYECACK-QAKTTQTSEHFRSN 558
+ G + S + T +G+++ISA DSNVY+W+ + K +AK+ ++ E F S
Sbjct: 511 FEGPWNLKALSSPSLTSDGRYLISAGLDSNVYIWNFDIPSVADHKGEAKSVRSCEKFFSK 570
Query: 559 NAAIAIPWNGT-KPRSPVPLSSQILPPQGDTFWSMSKAIKYNSSLCGKDSSIKKIVSTPA 617
+ A+PW G + R V SS + T S+S I + G+ S PA
Sbjct: 571 DVTTAVPWPGLHQERQQVKNSSSL------TEESVSSPILHRH---GERRS-------PA 614
Query: 618 APGIFNLNQEFFIESSCKSSATWPEEMLPSTTASVNLDESQFKLLRNCFQGTSNSWGQVI 677
A + K + TWPEE LP A + L +C S +W VI
Sbjct: 615 ARCFAD---------GMKGTPTWPEEKLPPAKA------ADAPRLSDCLSTISPAWNTVI 659
Query: 678 VTAGWDGRIRYFQNFGLPV 696
VTA DG IR F N+GLPV
Sbjct: 660 VTASRDGVIRSFHNYGLPV 678
>Os04g0678300 WD40-like domain containing protein
Length = 819
Score = 310 bits (793), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 179/519 (34%), Positives = 282/519 (54%), Gaps = 36/519 (6%)
Query: 205 RIKVHSYRKRSKELSAVYQGQVIKAHDGAILTMKFSPDGQLLATGGEDGVVRVWAVMQSE 264
R++V Y K KEL+ ++ Q + AH G+I + FS DG+ LA+ GED V+ VW V + E
Sbjct: 308 RVRVRQYGKACKELTGLFMTQELAAHSGSIWCINFSLDGRYLASAGEDRVIHVWEVSEGE 367
Query: 265 DCKIPLDDPSCVYLKARRKYG-----LAPVN------------------AESEKKSKING 301
L + + AR G LA V E +++ ++
Sbjct: 368 RKGELLGEGTV----ARENGGGCSPFLAAVGNGSPELATLSLSCADGGFVEKKRRPRMQS 423
Query: 302 LKKS-DSACIVVPTMVFQISEEPVHEFRGHSGDVLDLSWSSDKHLLSASTDKTVRMWEIG 360
+KS S +VVP VF ++PV GH+ DVLDLSWS ++LLS+S DKTV++W+I
Sbjct: 424 SRKSVGSDHLVVPECVFGFRDKPVCSLLGHAADVLDLSWSKSQYLLSSSMDKTVKLWDIT 483
Query: 361 YANCIRVYPHSNFVTCVQFNLADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVC 420
+ C++ + H+++VTC+QFN D+N FISGS+D K+R+W++ + DW D+ ++VTA C
Sbjct: 484 TSTCLKTFSHTDYVTCIQFNPVDDNFFISGSLDEKVRIWNVHDRKIEDWNDLHEMVTAAC 543
Query: 421 YRPXXXXXXXXTITGNCRFYEISDNLLKLETQIALN-GKKKSSLKRITGFQFCPSNPSKL 479
Y P + G+C ++ ++ L+ ++QI L KKKS K+ITGFQF P + S++
Sbjct: 544 YSPDGQVALVGSHKGSCHLFDTTEKKLQYKSQIELRIRKKKSGQKKITGFQFAPGSSSEV 603
Query: 480 MVTSADSKIRILDGTNVIQNYSGLRSGSCQLSATFTPEGQHIISASEDSNVYVWSHENQY 539
++TSADS+IR+++G ++ + G R+ S Q+SA+ P G++++ ASEDS+VYVW H+N
Sbjct: 604 LITSADSRIRVVNGDELVHKFKGFRNTSSQISASVAPNGKYVVCASEDSHVYVWRHDNTS 663
Query: 540 ECACKQAK--TTQTSEHFRSNNAAIAIPWNGTKPRSPVPLSSQILPPQGDTFWSMSKAIK 597
+ ++ T + EHF ++ +AI W G + R S D + +
Sbjct: 664 HPSRSRSAVDVTNSYEHFHCHDVTVAITWPGAESRGSFGSRSSRNSDSDDAVMNTGRDAP 723
Query: 598 YNSSLCGKDSSIKKIVSTPAAPGIFNLNQEFFIESSCKSSATWPEEMLPSTTASVNLDES 657
+S + ++ + P G+ + + + S +WP+E S +S S
Sbjct: 724 VENSEHDLNGTVNRCTKRPVCEGVASTSN----PPADGVSTSWPDEKQSSAKSSPGHCSS 779
Query: 658 QFKLLRNCFQGTSNSWGQVIVTAGWDGRIRYFQNFGLPV 696
+ Q S +WG VIVTAG G IR FQNFG PV
Sbjct: 780 DLCIGALDVQRRS-AWGLVIVTAGRGGEIRVFQNFGFPV 817
>Os11g0187000 WD40-like domain containing protein
Length = 1391
Score = 301 bits (772), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 185/521 (35%), Positives = 277/521 (53%), Gaps = 61/521 (11%)
Query: 204 ERIKVHSYRKRSKELSAVYQGQVIKAHDGAILTMKFSPDGQLLATGGED------GVVRV 257
ER KVHS+ K ++EL+ +Y Q ++AH+G+I ++KFSPDG+ LA+GGED VV
Sbjct: 399 ERPKVHSFGKTARELTGMYFRQEVRAHEGSIWSIKFSPDGRFLASGGEDRVVHVWHVVDD 458
Query: 258 WAVMQSEDCKIPLDDPSCVYLKARRKYGLAPVNAESEKKSKINGLKKSDSACIVVPTMVF 317
A S ++ S L GLA + + + K +VVP F
Sbjct: 459 GAPPSSMSPELLSSSQSLPPLAPHGDGGLAAQLSRKLRARRWKTCKDVLPEHVVVPETAF 518
Query: 318 QISEEPVHEFRGHSGDVLDLSWSS-DKHLLSASTDKTVRMWEIGYANCIRVYPHSNFVTC 376
+++EP GH DVLDL+WS + LLS+S DKTVR+W+ C++++PH+++VTC
Sbjct: 519 ALADEPACSLEGHLDDVLDLAWSMYSQLLLSSSMDKTVRLWDTEAKACLKLFPHNDYVTC 578
Query: 377 VQFNLADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVCYRPXXXXXXXXTITGN 436
VQFN D+ FISGS+D K+R+W + VVDW D+ D+VTA CY P + G+
Sbjct: 579 VQFNPVDDGYFISGSLDSKVRIWSVAERQVVDWSDLDDMVTAACYTPDGQAAIVGSHKGS 638
Query: 437 CRFYEISDNLLKLETQIALN--GKKKSSLKRITGFQFCPSNPSKLMVTSADSKIRILDGT 494
CRFY+ +D L E QI +N K+KS K+ITGFQF P NPS+++VT+ADS+IR+ +G
Sbjct: 639 CRFYKTADCKLNQEAQIDMNISKKRKSHAKKITGFQFAPGNPSEILVTTADSQIRVFNGI 698
Query: 495 NVIQNYSGLRSGSCQLSATFTPEGQHIISASEDSNVYVWSHENQYECACKQA-------- 546
V+Q + G ++ S Q+SA+++ +G++++ +SEDSNVYVW A
Sbjct: 699 TVLQKFKGFKNTSSQISASYSGDGRYVVCSSEDSNVYVWRRATSPGGAAGGGVAVKAKTW 758
Query: 547 KTTQTSEHFRSNNAAIAIPWNGTKPRSPVPLSSQILPPQGDTFWSMSKAIKYNSS----L 602
+T++ E F + + A+PW P SP LPP + +SS +
Sbjct: 759 RTSRAYECFFCKDVSAAVPW----PLSPC------LPPTRGGGGGGDDDERASSSVRGAV 808
Query: 603 CGKDSS-----IKKIVSTPAAP--GIFNLNQEFFIESSCKSSATWPEEMLPSTTASVNLD 655
G D+S +++ S P P G + E + + S+ W
Sbjct: 809 VGGDASASRSPARQLGSLPLRPKSGPMTYSGEKQLGVPREPSSRW--------------- 853
Query: 656 ESQFKLLRNCFQGTSNSWGQVIVTAGWDGRIRYFQNFGLPV 696
+G N+WG V+VTA G IR +QNFG+P+
Sbjct: 854 -------HGGAEG-GNAWGMVVVTASLAGEIRVYQNFGMPL 886
>Os02g0539900 WD40-like domain containing protein
Length = 672
Score = 275 bits (704), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 170/504 (33%), Positives = 250/504 (49%), Gaps = 66/504 (13%)
Query: 198 IGAGRYERIKVHSYRKRSKELSAVYQGQVIKAHDGAILTMKFSPDGQLLATGGEDGVVRV 257
+ +G R KVH K+ + +AVY Q I+AH+G I MKFS G LA+GGED VVRV
Sbjct: 228 LNSGTLYRTKVHQQNKKWMDFTAVYMCQEIQAHEGLIRVMKFSSSGWHLASGGEDCVVRV 287
Query: 258 WAVMQSEDCKIPLDDPSCVYLKARRKYGLAPVNAESEKKSKINGLKKSDSACIVVPTMVF 317
W + + E S L R P + +K KI L ++P VF
Sbjct: 288 WQITEVE---------SSPDLYGRD----VPEDMNKKKDVKIKPLA-------IIPKKVF 327
Query: 318 QISEEPVHEFRGHSGDVLDLSWSSDKHLLSASTDKTVRMWEIGYANCIRVYPHSNFVTCV 377
I+E P+HEF+GH+ DVLDL+WS LLS+S D T+RMW++G +C+ V+ H ++VTCV
Sbjct: 328 SITETPLHEFQGHTSDVLDLAWSKSDFLLSSSKDTTIRMWKVGCYDCLAVFRHGDYVTCV 387
Query: 378 QFNLADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVCYRPXXXXXXXXTITGNC 437
QFN DE FISGSIDGK+RVWD++ VVDW D + I+TA+ +RP ++ G C
Sbjct: 388 QFNPVDERYFISGSIDGKVRVWDVSDKRVVDWDDTKYIITAISHRPDGKGFVVGSVKGRC 447
Query: 438 RFYEISDNLLKLETQIALN-----GKKKSSLKRITGFQFCPSNPSKLMVTSADSKIRILD 492
RFY+ S L L I N +++ + +IT QF +PS++++TS D KIR+ +
Sbjct: 448 RFYDQS-GLFPLGRNIERNKLMRIKRRRCAANKITNIQFSQGHPSRMIITSKDHKIRVSE 506
Query: 493 GTNVIQNYSGLRSGSCQLSATFTPEGQHIISASEDSNVYVWSHENQYECACKQAKTTQTS 552
G + Q + G + + TP+G+++ISA DS + +W+ ++ ++ + +
Sbjct: 507 GHKITQKFQGQWRSKVLVPPSLTPDGRYLISAGRDSKIRIWN----FDGGGRRRRVVSSR 562
Query: 553 EHFRSNNAAIAIPWNGTKPRSPVPLSSQILPPQGDTFWSMSKAIKYNSSLCGKDSSIKKI 612
E F S PW R+ P + Y+ C S
Sbjct: 563 ELFFSEGVTAVAPW----ARAMGGGGGGADAP----------TLCYDRERC----SFGTW 604
Query: 613 VSTPAAPGIFNLNQEFFIESSCKSSATWPEEMLPSTTASVNLDESQFKLLRNCFQGTSNS 672
P ++ ++ TWPEE L + VN + +C +
Sbjct: 605 FVVPDG-------------AAAAAATTWPEERLLPSLRYVNC-----AGMDDCRSQVPAA 646
Query: 673 WGQVIVTAGWDGRIRYFQNFGLPV 696
W V+VT G IR F N+GLPV
Sbjct: 647 WNMVVVTGSRGGAIRAFHNYGLPV 670
>Os02g0638900 WD40-like domain containing protein
Length = 479
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/243 (41%), Positives = 147/243 (60%), Gaps = 3/243 (1%)
Query: 204 ERIKVHSYRKRSKELSAVYQGQVIKAHDGAILTMKFSPDGQLLATGGEDGVVRVWAVMQS 263
+R+KV Y K KELS ++ Q IKAH G+I ++KFSPDG LA+ GED V+ VW V++
Sbjct: 216 DRVKVRQYGKSYKELSGLFMNQDIKAHSGSIWSIKFSPDGHFLASAGEDCVIHVWEVLEW 275
Query: 264 EDCKIPLDDPSCVYLKARRKYGLAPVNAESEKKSKINGLKKSDSAC---IVVPTMVFQIS 320
+ + + + V+ A + EKK + + S ++VP VF +S
Sbjct: 276 KMIEEKGLEENGVFDPESMLVSTASEGSHREKKLRAKAVHNQRSVSSDRLMVPEHVFALS 335
Query: 321 EEPVHEFRGHSGDVLDLSWSSDKHLLSASTDKTVRMWEIGYANCIRVYPHSNFVTCVQFN 380
E+PV F GHS DVLDLSWS ++LLS+S DKTVR+W + C++ + HS++VTC+QFN
Sbjct: 336 EKPVITFAGHSEDVLDLSWSKSQYLLSSSMDKTVRLWHVSSTYCLKTFSHSDYVTCIQFN 395
Query: 381 LADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVCYRPXXXXXXXXTITGNCRFY 440
++ FISGS+D K+R+W I +VDW+D+ +++TA CY P + G C Y
Sbjct: 396 PVNDKYFISGSLDKKVRIWSIQERKIVDWIDLHEMITAACYTPDGQGALVGSHKGKCHVY 455
Query: 441 EIS 443
+IS
Sbjct: 456 DIS 458
>Os12g0178633 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 627
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 132/391 (33%), Positives = 197/391 (50%), Gaps = 69/391 (17%)
Query: 204 ERIKVHSYRKRSKELSAVYQGQVIKAHDGAILTMKFSPDGQLLATGGEDGVVRVWAVMQ- 262
ER+KVH K KEL+ +Y Q I AH+G+I ++KFS DG+ LA+ GED VVR+W V++
Sbjct: 174 ERLKVHQSGKSCKELTGLYMCQEIMAHEGSIWSIKFSTDGRWLASAGEDHVVRIWQVVEA 233
Query: 263 -SEDCKIPLDDPSCVYLKARRKYGL--------APVNAESEKKSKINGLKKSDS--ACIV 311
S C +P D S P ++ KKS + G D+ +V
Sbjct: 234 NSPAC-LPNDGHSGPLPPHPPGAAPADGTSSSSTPALSQLSKKS-VKGKSGRDTLPEHLV 291
Query: 312 VPTMVFQISEEPVHEFRGHSGDVLDLSWSSDKHLLSASTDKTVRMWEIGYANCIRVYPHS 371
VP VF ++++P GH DVLDL+WS LLS+S DKTVR+W+ C++V+ H+
Sbjct: 292 VPDKVFALADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKACLKVFAHN 351
Query: 372 NFVTCVQFNLADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVCYRPXXXXXXXX 431
++VTC+QFN AD+ FISGS+D K+R+W I VVDW D+ ++VTA Y P
Sbjct: 352 DYVTCIQFNPADDRFFISGSLDAKVRLWSIPDRQVVDWTDLNEMVTAASYTPDGQGAIIG 411
Query: 432 TITGNCRFYEIS---DNLLKLETQIALNGKKKSSLKRITGFQFCPSNPSKLMVTSADSKI 488
+ G+CRFY+ + D E Q+A G++ R+ GF
Sbjct: 412 SHKGSCRFYKTTGGADRHRDEEAQVA--GEED---HRLPGF------------------- 447
Query: 489 RILDGTNVIQNYSGLRSGSCQLSATFTPEGQHIISASEDSNVYVWSHENQYECAC----- 543
++ S Q+SA +T +G++++ SEDS+VY+W A
Sbjct: 448 ---------------KNTSSQISAAYTSDGRYVVCPSEDSHVYLWRAARGAPPAAAAIGS 492
Query: 544 --------KQAKTTQTSEHFRSNNAAIAIPW 566
K T ++ E+F + + A+PW
Sbjct: 493 IGGIGMKPKTWCTIRSFENFYCKDVSAAVPW 523
>Os04g0529400 WD40-like domain containing protein
Length = 150
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 62/138 (44%), Positives = 92/138 (66%), Gaps = 1/138 (0%)
Query: 374 VTCVQFNLADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVCYRPXXXXXXXXTI 433
VTC+QFN D+ FISGS+D K+R+W I +VDW D+ ++VTA CY P +
Sbjct: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
Query: 434 TGNCRFYEISDNLLKLETQIAL-NGKKKSSLKRITGFQFCPSNPSKLMVTSADSKIRILD 492
G+C Y+ SDN L + QI L N K+KS+ K+ITGFQF P + SK+++TSADS+IR++D
Sbjct: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
Query: 493 GTNVIQNYSGLRSGSCQL 510
G ++ + G++ + +L
Sbjct: 123 GFELVHKFKGIKFCALEL 140
>Os06g0653800 Similar to WD-repeat protein 57 (Prp8-binding protein) (hPRP8BP)
(U5 snRNP- specific 40 kDa protein) (38 kDa splicing
factor)
Length = 343
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 110/241 (45%), Gaps = 22/241 (9%)
Query: 327 FRGHSGDVLDLSWSSD-KHLLSASTDKTVRMWEIGYANCIR-VYPHSNFVTCVQFNLADE 384
RGH VLDL W++D ++SAS DKTVR+W++ ++ + HS+FV
Sbjct: 92 LRGHKNAVLDLQWTTDGTQIISASPDKTVRVWDVETGKQVKKMAEHSSFVNSCCPARKWP 151
Query: 385 NLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVCYRPXXXXXXXXTITGNCRFYEISD 444
L +SGS DG ++WD+ + + + + +TAV + + + +++++
Sbjct: 152 PLVVSGSDDGTAKLWDLRQRGAIQTLPDKYQITAVSFSEAADKVFTGGLDNDVKWWDLRK 211
Query: 445 NLLKLETQIALNGKKKSSLKRITGFQFCPSNPSKLMVTSADSKIRILD------GTNVIQ 498
N E L G + ITG Q P S L+ + D++++I D I+
Sbjct: 212 N----EVTEYLKGHQ----DMITGMQLSPDG-SYLLTNAMDNELKIWDLRPYAPENRNIK 262
Query: 499 NYSGLRSG--SCQLSATFTPEGQHIISASEDSNVYVWSHENQ---YECACKQAKTTQTSE 553
+G + L +++P+ + + + S D VY+W ++ Y+ +T+
Sbjct: 263 TLTGHQHNFEKNLLKCSWSPDNRKVTAGSADRMVYIWDTTSRRILYKLPGHNGSVNETAF 322
Query: 554 H 554
H
Sbjct: 323 H 323
>Os07g0572000 WD40-like domain containing protein
Length = 338
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 106/239 (44%), Gaps = 37/239 (15%)
Query: 324 VHEFRGHSGDVLDLSWSSDK-HLLSASTDKTVRMWEI----------------------- 359
+ RGH+ V D+SWS+D +L SAS D+T+R+W++
Sbjct: 60 IATLRGHADGVSDISWSTDSFYLCSASDDRTLRIWDVRPVLAGLNPGSGGGGGGAQPADP 119
Query: 360 GYANCIRVYP-HSNFVTCVQFNLADENLFISGSIDGKIRVWDITRSSVVDWVDIR-DIVT 417
CIRV H+NFV FN + SG D +R+WD+ V +D + VT
Sbjct: 120 NADRCIRVLKGHTNFVFSANFNPQTNSTVASGGFDCTVRIWDVKSGRCVRAIDAHSEPVT 179
Query: 418 AVCYRPXXXXXXXXTITGNCRFYEISDNLLKLETQIALNGKKKSSLKRITGFQFCPSNPS 477
+V + + G C+ ++ L+T I +KK ++ F N
Sbjct: 180 SVHFIRDGSIIVSGSHDGTCKIWDAGTGSC-LKTVI---DEKKPAVS----FSMFSPNGK 231
Query: 478 KLMVTSADSKIRILD--GTNVIQNYSG-LRSGSCQLSATFTPEGQHIISASEDSNVYVW 533
++V + D +++ + ++ YSG + C SA G++I+S SED+ VY+W
Sbjct: 232 FILVAALDDTLKLCNFASGKFLKMYSGHVNRKYCLQSAFSVTNGKYIVSGSEDNCVYIW 290
>Os03g0725400 Similar to WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
(WD-repeat protein BIG-3)
Length = 324
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 24/231 (10%)
Query: 323 PVHEFRGHSGDVLDLSWSSDKHLL-SASTDKTVRMWEIGYANCIR----------VYPHS 371
PV E GH V DL++S D L+ SAS D+TVR+W++G + H+
Sbjct: 54 PVAELAGHGEGVSDLAFSPDGRLIASASDDRTVRIWDLGDGGGGGGGGEPRLMKTLSGHT 113
Query: 372 NFVTCVQFNLADENLFISGSIDGKIRVWDITRSSVVDWVDIR-DIVTAVCYRPXXXXXXX 430
N+ C+ F+ N+ SGS D +RVW++ + + + VT+V +
Sbjct: 114 NYAFCLAFS-PHGNMLASGSFDETVRVWEVRSGRCLRVLPAHSEPVTSVDFNRDGAMIVS 172
Query: 431 XTITGNCRFYEISDNLLKLETQIALNGKKKSSLKRITGFQFCPSNPSKLMVTSADSKIRI 490
+ G CR ++ + T + ++ +F P N ++ + DSK+R+
Sbjct: 173 GSYDGLCRIWDSA-------TGHCIKTLIDDESPPVSFAKFSP-NGKFVLAATLDSKLRL 224
Query: 491 --LDGTNVIQNYSG-LRSGSCQLSATFTPEGQHIISASEDSNVYVWSHENQ 538
++ Y+G + + C +A G++I+S SED VY+W +++
Sbjct: 225 WNFSAGKFLKTYTGHVNTKYCIPAAFSITNGKYIVSGSEDKCVYIWDLQSR 275
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,345,617
Number of extensions: 832863
Number of successful extensions: 3108
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 3078
Number of HSP's successfully gapped: 12
Length of query: 698
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 590
Effective length of database: 11,396,689
Effective search space: 6724046510
Effective search space used: 6724046510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)