Os04g0417800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os04g0417800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.14 | 0.258 | 10.8 | 0.141 | 1.19 | 0.533 | -0.885 | -7.21 | 0.53 | 11.6 | 29.9 | 1145 | -- | -- |
| 35.57 | 0.28 | 10.7 | 1.23 | 1.2 | 0.135 | -0.8 | -- | 0.589 | 11.6 | 26.94 | 47520 | -- | -- |
| 33.48 | 0.269 | 10.8 | 0.129 | 1.2 | 0.557 | -- | -7.25 | 0.545 | 11.7 | 30.2 | 1135 | -- | -- |
| 38.32 | 0.29 | 10.7 | 1.21 | 1.22 | 0.0907 | -- | -- | 0.586 | 11.7 | 26.94 | 47520 | -- | -- |
| 120.06 | 0.51 | 10.8 | 0.298 | -- | 0.227 | -- | -6.93 | 0.482 | -- | 30.18 | 1016 | -- | -- |
| 35.82 | 0.281 | 10.7 | 1.25 | 1.23 | -- | -0.776 | -- | 0.59 | 11.7 | -- | -- | -- | -- |
| 38.43 | 0.29 | 10.7 | 1.22 | 1.23 | -- | -- | -- | 0.587 | 11.8 | -- | -- | -- | -- |
| 114.31 | 0.5 | 10.7 | 1.06 | -- | 0.901 | -- | -- | 0.504 | -- | 24.9 | 2390 | -- | -- |
| 50.21 | 0.33 | 10.7 | -- | 1.25 | 0.832 | -- | -- | 0.199 | 11.8 | 12.3 | 47520 | -- | -- |
| 134.07 | 0.541 | 10.7 | 1.18 | -- | -- | -- | -- | 0.572 | -- | -- | -- | -- | -- |
| 77.42 | 0.412 | 10.7 | -- | 1.22 | -- | -- | -- | 0.452 | 11.7 | -- | -- | -- | -- |
| 138.37 | 0.55 | 10.8 | -- | -- | 1.46 | -- | -- | 0.275 | -- | 10.41 | 47520 | -- | -- |
| 170.82 | 0.61 | 10.7 | -- | -- | -- | -- | -- | 0.441 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.03 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 2 | 29.03 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 10 | 29.04 | humidity | 70.0 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 14 | 29.06 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 29 | 29.29 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 17 | 3 |
| 128 | 29.86 | humidity | 70.0 | 4320 | < th | dose independent | sin | 13 | NA |
| 137 | 29.94 | humidity | 70.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 161 | 30.05 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 5 |
| 198 | 30.12 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 15 | 2 |
| 204 | 30.14 | humidity | 80.0 | 4320 | < th | dose dependent | sin | 15 | NA |
| 239 | 30.29 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 20 | 1 |
| 243 | 30.30 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 247 | 30.31 | atmosphere | 995.0 | 720 | > th | dose independent | rect. | 5 | 18 |
| 266 | 30.33 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 17 | 18 |
| 268 | 30.34 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 277 | 30.36 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 278 | 30.36 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 299 | 30.38 | humidity | 50.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 304 | 30.39 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 20 |
| 311 | 30.41 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 313 | 30.41 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 10 | NA |
| 326 | 30.44 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 3 |
| 337 | 30.46 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 359 | 30.47 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 371 | 30.49 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 377 | 30.50 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 7 |
| 409 | 30.50 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 418 | 30.51 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 431 | 30.52 | temperature | 30.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 465 | 30.53 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 490 | 30.54 | temperature | 30.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 498 | 30.54 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 515 | 30.55 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 518 | 30.55 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 542 | 30.56 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 17 | 13 |
| 548 | 30.56 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 1 |
| 557 | 30.57 | humidity | 50.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 578 | 30.59 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 606 | 30.60 | humidity | 80.0 | 720 | < th | dose independent | rect. | 16 | 5 |
| 659 | 30.62 | temperature | 30.0 | 1440 | > th | dose dependent | sin | 15 | NA |
| 664 | 30.62 | temperature | 30.0 | 1440 | > th | dose dependent | no | NA | NA |
| 665 | 30.62 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 776 | 30.63 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 874 | 30.65 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 16 | 12 |
| 891 | 30.65 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 23 |
| 892 | 30.66 | temperature | 30.0 | 1440 | < th | dose independent | sin | 11 | NA |
| 915 | 30.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 19 |
| 947 | 30.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 13 |
| 953 | 30.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 954 | 30.68 | atmosphere | 1000.0 | 270 | > th | dose independent | sin | 14 | NA |
| 965 | 30.68 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 983 | 30.68 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 10 |