BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0417800 Os04g0417800|AK067483
(680 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0417800 WD40-like domain containing protein 1234 0.0
Os02g0539900 WD40-like domain containing protein 496 e-140
Os03g0115400 WD40-like domain containing protein 348 8e-96
Os04g0568400 Quinoprotein amine dehydrogenase, beta chain-l... 307 2e-83
Os04g0678300 WD40-like domain containing protein 253 3e-67
Os12g0178633 Quinonprotein alcohol dehydrogenase-like domai... 245 1e-64
Os11g0187000 WD40-like domain containing protein 232 7e-61
Os02g0638900 WD40-like domain containing protein 213 5e-55
Os04g0529400 WD40-like domain containing protein 103 3e-22
Os07g0205200 Similar to Transcription initiation factor TFI... 74 5e-13
>Os04g0417800 WD40-like domain containing protein
Length = 680
Score = 1234 bits (3194), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 606/680 (89%), Positives = 606/680 (89%)
Query: 1 MPSSESXXXXXXXXXXXXVTSTREPSLSDDCSTSDEGLASRRFEYDIWGNEPMSVEERRQ 60
MPSSES VTSTREPSLSDDCSTSDEGLASRRFEYDIWGNEPMSVEERRQ
Sbjct: 1 MPSSESDRDDIFFDAFDDVTSTREPSLSDDCSTSDEGLASRRFEYDIWGNEPMSVEERRQ 60
Query: 61 RFLKGMGFDEFLATRVDFSQPQGEITTVGPFADLGLEEXXXXXXXXXXXXXXXXXXXXDA 120
RFLKGMGFDEFLATRVDFSQPQGEITTVGPFADLGLEE DA
Sbjct: 61 RFLKGMGFDEFLATRVDFSQPQGEITTVGPFADLGLEESTTSDISSVNSSVPENESVSDA 120
Query: 121 SCCIGDIDSGERYTVQNDGYGELTSMLKDVASHKVVSLLEFDGVPGLSQSVQKLLRKVYS 180
SCCIGDIDSGERYTVQNDGYGELTSMLKDVASHKVVSLLEFDGVPGLSQSVQKLLRKVYS
Sbjct: 121 SCCIGDIDSGERYTVQNDGYGELTSMLKDVASHKVVSLLEFDGVPGLSQSVQKLLRKVYS 180
Query: 181 SSMEEXXXXXXXXXXXXSLWKSFMKNRSFGGICKHDVNVKNCTIGIPSRTKVQHRKKKTM 240
SSMEE SLWKSFMKNRSFGGICKHDVNVKNCTIGIPSRTKVQHRKKKTM
Sbjct: 181 SSMEEKKNVFNKKKGVKSLWKSFMKNRSFGGICKHDVNVKNCTIGIPSRTKVQHRKKKTM 240
Query: 241 EFSAVHLGQEIQAHKGLIKVMKFSPSGWYLATGGEDCIVRIWQIMEVEASSKLHGGDNPQ 300
EFSAVHLGQEIQAHKGLIKVMKFSPSGWYLATGGEDCIVRIWQIMEVEASSKLHGGDNPQ
Sbjct: 241 EFSAVHLGQEIQAHKGLIKVMKFSPSGWYLATGGEDCIVRIWQIMEVEASSKLHGGDNPQ 300
Query: 301 NYDDKITIIKTELGRGKNHALAVVPKKGFRISETPLHEFQGHTDDILDMAWSESDYLLTS 360
NYDDKITIIKTELGRGKNHALAVVPKKGFRISETPLHEFQGHTDDILDMAWSESDYLLTS
Sbjct: 301 NYDDKITIIKTELGRGKNHALAVVPKKGFRISETPLHEFQGHTDDILDMAWSESDYLLTS 360
Query: 361 SKDKMVRLWKVGCDGCLGLFKHKDYVTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVD 420
SKDKMVRLWKVGCDGCLGLFKHKDYVTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVD
Sbjct: 361 SKDKMVRLWKVGCDGCLGLFKHKDYVTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVD 420
Query: 421 WTDTRKIITALSYQPDGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKSAVHRVNSL 480
WTDTRKIITALSYQPDGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKSAVHRVNSL
Sbjct: 421 WTDTRKIITALSYQPDGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKSAVHRVNSL 480
Query: 481 QXXXXXXXXXXXXXXXXXXXVADGVDIIQKFEGPWNLKALSSPSLTSDGRYLISAGLDSN 540
Q VADGVDIIQKFEGPWNLKALSSPSLTSDGRYLISAGLDSN
Sbjct: 481 QSRSSDSSRITITSTGSKIRVADGVDIIQKFEGPWNLKALSSPSLTSDGRYLISAGLDSN 540
Query: 541 VYIWNFDIPSVADHKGEAKSVRSCEKFFSKDVTTAVPWPGLHQERQQVKNXXXXXXXXXX 600
VYIWNFDIPSVADHKGEAKSVRSCEKFFSKDVTTAVPWPGLHQERQQVKN
Sbjct: 541 VYIWNFDIPSVADHKGEAKSVRSCEKFFSKDVTTAVPWPGLHQERQQVKNSSSLTEESVS 600
Query: 601 XPILHRHGERRSPAARCFADGMKGTPTWPEEKLPPAKAADAPRLSDCLSTISPAWNTVIV 660
PILHRHGERRSPAARCFADGMKGTPTWPEEKLPPAKAADAPRLSDCLSTISPAWNTVIV
Sbjct: 601 SPILHRHGERRSPAARCFADGMKGTPTWPEEKLPPAKAADAPRLSDCLSTISPAWNTVIV 660
Query: 661 TASRDGVIRSFHNYGLPVRL 680
TASRDGVIRSFHNYGLPVRL
Sbjct: 661 TASRDGVIRSFHNYGLPVRL 680
>Os02g0539900 WD40-like domain containing protein
Length = 672
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 295/678 (43%), Positives = 383/678 (56%), Gaps = 63/678 (9%)
Query: 28 SDDCSTSDEGLASRRFEYDIWGNEPMSVEERRQRFLKGMGFDEFLATRVDFSQPQGEITT 87
S + STS+ G Y++W EPMSV ERR RFLKGMGF E T F Q EI T
Sbjct: 33 STEISTSEAG-------YELWAGEPMSVRERRHRFLKGMGFLEPGPTGTAFPQWLAEIAT 85
Query: 88 VGPFADLGLEEXXXXXXXXXXX------XXXXXXXXXDASCCIGDID---SGERYTVQND 138
+ EE A C D+D SG R T +D
Sbjct: 86 TDCCSFHDFEERISSICSSFRSCFSDSILAATDNTNDSADNCTRDVDYNSSGRRSTTSHD 145
Query: 139 -GYGELTSMLKDVA---SHKVVSLLEFDGVPGLSQSVQKLLRKVYSSSMEEXXXXXXXXX 194
G ++ S + + A S ++V+ + VPG S+ ++KLLR + +
Sbjct: 146 QGQHDVLSEIVEEAGTSSDEMVTPNAPEIVPGFSKLMRKLLRIRFGHGPKRNEFK----- 200
Query: 195 XXXSLWKSFMKNRSFGGICKHD---VNVKNCTIGIPSRTKVQHRKKKTMEFSAVHLGQEI 251
SLW+ FM+ + + D V + G RTKV + KK M+F+AV++ QEI
Sbjct: 201 ---SLWEIFMRKKVSDRVLSMDDVHVQPRGLNSGTLYRTKVHQQNKKWMDFTAVYMCQEI 257
Query: 252 QAHKGLIKVMKFSPSGWYLATGGEDCIVRIWQIMEVEASSKLHGGDNPQNYDDKITIIKT 311
QAH+GLI+VMKFS SGW+LA+GGEDC+VR+WQI EVE+S L+G D P++ + K +
Sbjct: 258 QAHEGLIRVMKFSSSGWHLASGGEDCVVRVWQITEVESSPDLYGRDVPEDMNKKKDV--- 314
Query: 312 ELGRGKNHALAVVPKKGFRISETPLHEFQGHTDDILDMAWSESDYLLTSSKDKMVRLWKV 371
K LA++PKK F I+ETPLHEFQGHT D+LD+AWS+SD+LL+SSKD +R+WKV
Sbjct: 315 -----KIKPLAIIPKKVFSITETPLHEFQGHTSDVLDLAWSKSDFLLSSSKDTTIRMWKV 369
Query: 372 GCDGCLGLFKHKDYVTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVDWTDTRKIITAL 431
GC CL +F+H DYVTCVQFNP+DERYFISGSIDGKVRVWD DKRVVDW DT+ IITA+
Sbjct: 370 GCYDCLAVFRHGDYVTCVQFNPVDERYFISGSIDGKVRVWDVSDKRVVDWDDTKYIITAI 429
Query: 432 SYQPDGKGFIVGTTSGECRFYDQS-----GENIQLDKELFMQGKKSAVHRVNSLQXXXXX 486
S++PDGKGF+VG+ G CRFYDQS G NI+ +K + ++ ++ A +++ ++Q
Sbjct: 430 SHRPDGKGFVVGSVKGRCRFYDQSGLFPLGRNIERNKLMRIKRRRCAANKITNIQFSQGH 489
Query: 487 XXXXXXXXXXXXXXVADGVDIIQKFEGPWNLKALSSPSLTSDGRYLISAGLDSNVYIWNF 546
V++G I QKF+G W K L PSLT DGRYLISAG DS + IWNF
Sbjct: 490 PSRMIITSKDHKIRVSEGHKITQKFQGQWRSKVLVPPSLTPDGRYLISAGRDSKIRIWNF 549
Query: 547 DIPSVADHKGEAKSVRSCEKFFSKDVTTAVPWPGLHQERQQVKNXXXXXXXXXXXPILHR 606
D + V S E FFS+ VT PW + P L
Sbjct: 550 DGGGRR-----RRVVSSRELFFSEGVTAVAPWARAMGGGGGGAD----------APTLCY 594
Query: 607 HGERRSPAA-RCFADG--MKGTPTWPEEKLPPA-KAADAPRLSDCLSTISPAWNTVIVTA 662
ER S DG TWPEE+L P+ + + + DC S + AWN V+VT
Sbjct: 595 DRERCSFGTWFVVPDGAAAAAATTWPEERLLPSLRYVNCAGMDDCRSQVPAAWNMVVVTG 654
Query: 663 SRDGVIRSFHNYGLPVRL 680
SR G IR+FHNYGLPVRL
Sbjct: 655 SRGGAIRAFHNYGLPVRL 672
>Os03g0115400 WD40-like domain containing protein
Length = 746
Score = 348 bits (893), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 232/713 (32%), Positives = 341/713 (47%), Gaps = 88/713 (12%)
Query: 46 DIWGNEPMSVEERRQRFLKGMGF--------------DEFLATRVDFSQPQGEITTVGPF 91
++W +P SV ERRQRF+K +G DE +R S EI P
Sbjct: 44 EVWATDPCSVHERRQRFIKSLGLSDSSPSAGGGGDRPDEEPCSR---SSAAEEILPCSPT 100
Query: 92 ADLGLEEXXXXXXXXXXXXXXXXXXXXDASCCIGDIDSGERYTVQNDGYGELTSMLKDVA 151
+L C ++D G + V G L+D
Sbjct: 101 VELVSAVPSFACRGEEPGASGGGGGAEVLDCVFKNLDDGTVFVVDEMGKDGSFRSLRDRR 160
Query: 152 SHKVVSLLEFDGVPGLSQSVQKLLRKVYSSSMEEXXXXXXXXXXXXSLWKSFMKNRSFGG 211
S++ V+ EF+ G S + +L+R+V S +++ G
Sbjct: 161 SNRTVTAAEFERTYGSSPFICELMRRVDDSDESSAVEKALVRGRRRRRRFGWLRRLGIRG 220
Query: 212 ICKHDVNVKNCT-----------IGIPSRTKVQHRKKKTMEFSAVHLGQEIQAHKGLIKV 260
C DV + T G R KV+H KK++ E SAV+ GQ+I+AH+G I
Sbjct: 221 -CVVDVEEDDETNSTSSSSCRSCSGKVDRVKVRHYKKRSKELSAVYRGQDIKAHEGAIVT 279
Query: 261 MKFSPSGWYLATGGEDCIVRIWQIMEVEASSKL-HGGDNPQ------NYDDKITIIKTEL 313
MKFS G YLATGGED +VR+W+++E E ++L D+P N + ++ + +
Sbjct: 280 MKFSSDGQYLATGGEDGVVRVWRVVEGERPNELDFAEDDPSCVFFTVNENSELAPVNSSE 339
Query: 314 GRGKNH----------ALAVVPKKGFRISETPLHEFQGHTDDILDMAWSESDYLLTSSKD 363
G H A V+P + F +S+ P+HEF GH D ILD++WS++ LL+SS D
Sbjct: 340 GSKSKHYKNSKVSTDPACVVIPHRTFALSQEPVHEFYGHDDAILDLSWSKNRDLLSSSMD 399
Query: 364 KMVRLWKVGCDGCLGLFKHKDYVTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVDWTD 423
K VRLW+VGC+ CL +F H +YVTCVQF+P + YFISG IDG VR+WD +VVDW D
Sbjct: 400 KTVRLWQVGCNSCLKVFSHTNYVTCVQFHPTSDNYFISGCIDGLVRIWDVRRCQVVDWAD 459
Query: 424 TRKIITALSYQPDGKGFIVGTTSGECRFYDQSGENIQLDKELFMQG-KKSAVHRVNSLQX 482
T++IITA+ Y+PDGK +VGT +G CR YD S +++L+ ++ + G KKS + R+ Q
Sbjct: 460 TKEIITAVCYRPDGKAAVVGTITGNCRHYDASENHLELESQVALNGRKKSPLKRIIGFQY 519
Query: 483 XXXXXXXXXXXXXXXXXXVADGVDIIQKFEGPWNLKALSSPSLTSDGRYLISAGLDSNVY 542
+ DG+ +I ++G + +++ S T DG ++ISA DS++Y
Sbjct: 520 CPSDPKKLMVTSGDSQVRILDGLHVISNYKGLRSSSQVAA-SFTPDGDHIISASDDSSIY 578
Query: 543 IWNF--DIPSVADHKGEAKSVRSCEKFFSKDVTTAVPWPGLHQERQQVKNXXXXXXXXXX 600
+WN+ I V +H K+V S E F DV A+PW Q R + +
Sbjct: 579 MWNYANQIAPVTNH---VKTVWSNEHFSCHDVAIAIPW-NASQTRNSI-SLACSITSSQQ 633
Query: 601 XPILHRHGERRSP------------------------AARCFADGM-KGTPTWPEEKLPP 635
+ H E S ++ FA+ +G+ TWPEE+LP
Sbjct: 634 EVLDEFHNEHDSSSCSHTEDSPDGDSLYQLPSGNFTLSSAFFAESAPRGSATWPEEQLPS 693
Query: 636 AKAADAPRL--------SDCLSTISPAWNTVIVTASRDGVIRSFHNYGLPVRL 680
+ + C + + AW VIV A DG IRSF NYGLPV++
Sbjct: 694 NSTTQSTLRKSQYKFLKASCQNAATHAWGQVIVAAGWDGYIRSFQNYGLPVQV 746
>Os04g0568400 Quinoprotein amine dehydrogenase, beta chain-like domain containing
protein
Length = 698
Score = 307 bits (786), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 183/498 (36%), Positives = 259/498 (52%), Gaps = 54/498 (10%)
Query: 229 RTKVQHRKKKTMEFSAVHLGQEIQAHKGLIKVMKFSPSGWYLATGGEDCIVRIWQIMEVE 288
R KV +K++ E SAV+ GQ I+AH G I MKFSP G LATGGED +VR+W +M+ E
Sbjct: 205 RIKVHSYRKRSKELSAVYQGQVIKAHDGAILTMKFSPDGQLLATGGEDGVVRVWAVMQSE 264
Query: 289 -------------ASSKLHGGDNPQNYDD----KITIIKTELGRGKNHALAVVPKKGFRI 331
++ G P N + KI +K + A VVP F+I
Sbjct: 265 DCKIPLDDPSCVYLKARRKYGLAPVNAESEKKSKINGLKKS-----DSACIVVPTMVFQI 319
Query: 332 SETPLHEFQGHTDDILDMAWSESDYLLTSSKDKMVRLWKVGCDGCLGLFKHKDYVTCVQF 391
SE P+HEF+GH+ D+LD++WS +LL++S DK VR+W++G C+ ++ H ++VTCVQF
Sbjct: 320 SEEPVHEFRGHSGDVLDLSWSSDKHLLSASTDKTVRMWEIGYANCIRVYPHSNFVTCVQF 379
Query: 392 NPIDERYFISGSIDGKVRVWDALDKRVVDWTDTRKIITALSYQPDGKGFIVGTTSGECRF 451
N DE FISGSIDGK+RVWD VVDW D R I+TA+ Y+P GKG +VGT +G CRF
Sbjct: 380 NLADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVCYRPGGKGVVVGTITGNCRF 439
Query: 452 YDQSGENIQLDKELFMQG-KKSAVHRVNSLQXXXXXXXXXXXXXXXXXXXVADGVDIIQK 510
Y+ S ++L+ ++ + G KKS++ R+ Q + DG ++IQ
Sbjct: 440 YEISDNLLKLETQIALNGKKKSSLKRITGFQFCPSNPSKLMVTSADSKIRILDGTNVIQN 499
Query: 511 FEGPWNLKALSSPSLTSDGRYLISAGLDSNVYIWNFDIPSVADHKGEAKSVRSCEKFFSK 570
+ G + S + T +G+++ISA DSNVY+W+ + K +AK+ ++ E F S
Sbjct: 500 YSGLRSGSCQLSATFTPEGQHIISASEDSNVYVWSHENQYECACK-QAKTTQTSEHFRSN 558
Query: 571 DVTTAVPWPGLHQE-----RQQVKNXXXXXXXXXXXPILHRH---GERRS-------PAA 615
+ A+PW G Q+ I + G+ S PAA
Sbjct: 559 NAAIAIPWNGTKPRSPVPLSSQILPPQGDTFWSMSKAIKYNSSLCGKDSSIKKIVSTPAA 618
Query: 616 RCFAD---------GMKGTPTWPEEKLPPAKA------ADAPRLSDCLSTISPAWNTVIV 660
+ K + TWPEE LP A + L +C S +W VIV
Sbjct: 619 PGIFNLNQEFFIESSCKSSATWPEEMLPSTTASVNLDESQFKLLRNCFQGTSNSWGQVIV 678
Query: 661 TASRDGVIRSFHNYGLPV 678
TA DG IR F N+GLPV
Sbjct: 679 TAGWDGRIRYFQNFGLPV 696
>Os04g0678300 WD40-like domain containing protein
Length = 819
Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 160/516 (31%), Positives = 245/516 (47%), Gaps = 68/516 (13%)
Query: 229 RTKVQHRKKKTMEFSAVHLGQEIQAHKGLIKVMKFSPSGWYLATGGEDCIVRIWQIMEVE 288
R +V+ K E + + + QE+ AH G I + FS G YLA+ GED ++ +W++ E E
Sbjct: 308 RVRVRQYGKACKELTGLFMTQELAAHSGSIWCINFSLDGRYLASAGEDRVIHVWEVSEGE 367
Query: 289 ASSKL----------HGGDNP---------------------QNYDDKITIIKTELGR-- 315
+L GG +P + +K + + R
Sbjct: 368 RKGELLGEGTVARENGGGCSPFLAAVGNGSPELATLSLSCADGGFVEKKRRPRMQSSRKS 427
Query: 316 -GKNHALAVVPKKGFRISETPLHEFQGHTDDILDMAWSESDYLLTSSKDKMVRLWKVGCD 374
G +H VVP+ F + P+ GH D+LD++WS+S YLL+SS DK V+LW +
Sbjct: 428 VGSDHL--VVPECVFGFRDKPVCSLLGHAADVLDLSWSKSQYLLSSSMDKTVKLWDITTS 485
Query: 375 GCLGLFKHKDYVTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVDWTDTRKIITALSYQ 434
CL F H DYVTC+QFNP+D+ +FISGS+D KVR+W+ D+++ DW D +++TA Y
Sbjct: 486 TCLKTFSHTDYVTCIQFNPVDDNFFISGSLDEKVRIWNVHDRKIEDWNDLHEMVTAACYS 545
Query: 435 PDGKGFIVGTTSGECRFYDQSGENIQLDK--ELFMQGKKSAVHRVNSLQXXXXXXXXXXX 492
PDG+ +VG+ G C +D + + +Q EL ++ KKS ++ Q
Sbjct: 546 PDGQVALVGSHKGSCHLFDTTEKKLQYKSQIELRIRKKKSGQKKITGFQFAPGSSSEVLI 605
Query: 493 XXXXXXXXVADGVDIIQKFEGPWNLKALSSPSLTSDGRYLISAGLDSNVYIWNFDIPSVA 552
V +G +++ KF+G N + S S+ +G+Y++ A DS+VY+W D S
Sbjct: 606 TSADSRIRVVNGDELVHKFKGFRNTSSQISASVAPNGKYVVCASEDSHVYVWRHDNTSHP 665
Query: 553 DHKGEAKSV-RSCEKFFSKDVTTAVPWPGLH-------QERQQVKNXXXXXXXXXXXPIL 604
A V S E F DVT A+ WPG + + + P+
Sbjct: 666 SRSRSAVDVTNSYEHFHCHDVTVAITWPGAESRGSFGSRSSRNSDSDDAVMNTGRDAPVE 725
Query: 605 HRHGERRSPAARCF---------------ADGMKGTPTWPEEKLPPAKAADAPRLSD-CL 648
+ + RC ADG+ + +WP+EK AK++ SD C+
Sbjct: 726 NSEHDLNGTVNRCTKRPVCEGVASTSNPPADGV--STSWPDEKQSSAKSSPGHCSSDLCI 783
Query: 649 STIS----PAWNTVIVTASRDGVIRSFHNYGLPVRL 680
+ AW VIVTA R G IR F N+G PV++
Sbjct: 784 GALDVQRRSAWGLVIVTAGRGGEIRVFQNFGFPVQV 819
>Os12g0178633 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 627
Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 160/487 (32%), Positives = 227/487 (46%), Gaps = 77/487 (15%)
Query: 229 RTKVQHRKKKTMEFSAVHLGQEIQAHKGLIKVMKFSPSGWYLATGGEDCIVRIWQIMEVE 288
R KV K E + +++ QEI AH+G I +KFS G +LA+ GED +VRIWQ++E
Sbjct: 175 RLKVHQSGKSCKELTGLYMCQEIMAHEGSIWSIKFSTDGRWLASAGEDHVVRIWQVVEAN 234
Query: 289 ASSKL----------------------HGGDNPQNYDDKITIIKTELGRGKNHALAVVPK 326
+ + L P +K + GR VVP
Sbjct: 235 SPACLPNDGHSGPLPPHPPGAAPADGTSSSSTPALSQLSKKSVKGKSGRDTLPEHLVVPD 294
Query: 327 KGFRISETPLHEFQGHTDDILDMAWSESDYLLTSSKDKMVRLWKVGCDGCLGLFKHKDYV 386
K F +++ P +GH DD+LD+ WS++D LL+SS DK VRLW CL +F H DYV
Sbjct: 295 KVFALADQPACVLEGHQDDVLDLTWSKTDQLLSSSMDKTVRLWDTTTKACLKVFAHNDYV 354
Query: 387 TCVQFNPIDERYFISGSIDGKVRVWDALDKRVVDWTDTRKIITALSYQPDGKGFIVGTTS 446
TC+QFNP D+R+FISGS+D KVR+W D++VVDWTD +++TA SY PDG+G I+G+
Sbjct: 355 TCIQFNPADDRFFISGSLDAKVRLWSIPDRQVVDWTDLNEMVTAASYTPDGQGAIIGSHK 414
Query: 447 GECRFYDQS-GENIQLDKELFMQGKKSAVHRVNSLQXXXXXXXXXXXXXXXXXXXVADGV 505
G CRFY + G + D+E + G++ HR+ +
Sbjct: 415 GSCRFYKTTGGADRHRDEEAQVAGEED--HRLPGFK------------------------ 448
Query: 506 DIIQKFEGPWNLKALSSPSLTSDGRYLISAGLDSNVYIW---------NFDIPSVADHKG 556
N + S + TSDGRY++ DS+VY+W I S+
Sbjct: 449 ----------NTSSQISAAYTSDGRYVVCPSEDSHVYLWRAARGAPPAAAAIGSIGGIGM 498
Query: 557 EAK---SVRSCEKFFSKDVTTAVPWPGLHQERQQVKNXXXXXXXXXXXPILHRHGERRSP 613
+ K ++RS E F+ KDV+ AVPWP L + + S
Sbjct: 499 KPKTWCTIRSFENFYCKDVSAAVPWP-LAPSGAGGDGSTSGSSPSRRQGGVSCTDDVCSM 557
Query: 614 AARCFADGMKGTPTWPEEKLPPAKAADAPRLSDCLSTISPAWNTVIVTASRDGVIRSFHN 673
A+ G GTP +L AW V+VTAS G IR + N
Sbjct: 558 PAKSGELGSAGTPLTHSGQLGSPAPGGGKG-----GADGNAWGLVVVTASLQGEIRVYQN 612
Query: 674 YGLPVRL 680
+G+P R+
Sbjct: 613 FGMPFRI 619
>Os11g0187000 WD40-like domain containing protein
Length = 1391
Score = 232 bits (591), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 202/380 (53%), Gaps = 29/380 (7%)
Query: 229 RTKVQHRKKKTMEFSAVHLGQEIQAHKGLIKVMKFSPSGWYLATGGEDCIVRIWQIM--- 285
R KV K E + ++ QE++AH+G I +KFSP G +LA+GGED +V +W ++
Sbjct: 400 RPKVHSFGKTARELTGMYFRQEVRAHEGSIWSIKFSPDGRFLASGGEDRVVHVWHVVDDG 459
Query: 286 --------EVEASSKL------HG-GDNPQNYDDKITIIKTELGRGKNHALAVVPKKGFR 330
E+ +SS+ HG G K+ + + + VVP+ F
Sbjct: 460 APPSSMSPELLSSSQSLPPLAPHGDGGLAAQLSRKLRARRWKTCKDVLPEHVVVPETAFA 519
Query: 331 ISETPLHEFQGHTDDILDMAWSE-SDYLLTSSKDKMVRLWKVGCDGCLGLFKHKDYVTCV 389
+++ P +GH DD+LD+AWS S LL+SS DK VRLW CL LF H DYVTCV
Sbjct: 520 LADEPACSLEGHLDDVLDLAWSMYSQLLLSSSMDKTVRLWDTEAKACLKLFPHNDYVTCV 579
Query: 390 QFNPIDERYFISGSIDGKVRVWDALDKRVVDWTDTRKIITALSYQPDGKGFIVGTTSGEC 449
QFNP+D+ YFISGS+D KVR+W +++VVDW+D ++TA Y PDG+ IVG+ G C
Sbjct: 580 QFNPVDDGYFISGSLDSKVRIWSVAERQVVDWSDLDDMVTAACYTPDGQAAIVGSHKGSC 639
Query: 450 RFYDQSGENIQLDKELFM---QGKKSAVHRVNSLQXXXXXXXXXXXXXXXXXXXVADGVD 506
RFY + + + ++ M + +KS ++ Q V +G+
Sbjct: 640 RFYKTADCKLNQEAQIDMNISKKRKSHAKKITGFQFAPGNPSEILVTTADSQIRVFNGIT 699
Query: 507 IIQKFEGPWNLKALSSPSLTSDGRYLISAGLDSNVYIWNFDIPSVADHKGEA-------K 559
++QKF+G N + S S + DGRY++ + DSNVY+W G +
Sbjct: 700 VLQKFKGFKNTSSQISASYSGDGRYVVCSSEDSNVYVWRRATSPGGAAGGGVAVKAKTWR 759
Query: 560 SVRSCEKFFSKDVTTAVPWP 579
+ R+ E FF KDV+ AVPWP
Sbjct: 760 TSRAYECFFCKDVSAAVPWP 779
>Os02g0638900 WD40-like domain containing protein
Length = 479
Score = 213 bits (541), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 101/244 (41%), Positives = 151/244 (61%), Gaps = 15/244 (6%)
Query: 227 PSRTKVQHRKKKTMEFSAVHLGQEIQAHKGLIKVMKFSPSGWYLATGGEDCIVRIWQIME 286
P R KV+ K E S + + Q+I+AH G I +KFSP G +LA+ GEDC++ +W+++E
Sbjct: 215 PDRVKVRQYGKSYKELSGLFMNQDIKAHSGSIWSIKFSPDGHFLASAGEDCVIHVWEVLE 274
Query: 287 ----VEASSKLHGGDNPQNY-----------DDKITIIKTELGRGKNHALAVVPKKGFRI 331
E + +G +P++ + K+ R + +VP+ F +
Sbjct: 275 WKMIEEKGLEENGVFDPESMLVSTASEGSHREKKLRAKAVHNQRSVSSDRLMVPEHVFAL 334
Query: 332 SETPLHEFQGHTDDILDMAWSESDYLLTSSKDKMVRLWKVGCDGCLGLFKHKDYVTCVQF 391
SE P+ F GH++D+LD++WS+S YLL+SS DK VRLW V CL F H DYVTC+QF
Sbjct: 335 SEKPVITFAGHSEDVLDLSWSKSQYLLSSSMDKTVRLWHVSSTYCLKTFSHSDYVTCIQF 394
Query: 392 NPIDERYFISGSIDGKVRVWDALDKRVVDWTDTRKIITALSYQPDGKGFIVGTTSGECRF 451
NP++++YFISGS+D KVR+W ++++VDW D ++ITA Y PDG+G +VG+ G+C
Sbjct: 395 NPVNDKYFISGSLDKKVRIWSIQERKIVDWIDLHEMITAACYTPDGQGALVGSHKGKCHV 454
Query: 452 YDQS 455
YD S
Sbjct: 455 YDIS 458
>Os04g0529400 WD40-like domain containing protein
Length = 150
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 386 VTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVDWTDTRKIITALSYQPDGKGFIVGTT 445
VTC+QFNP+D+RYFISGS+D KVR+W + +VDW D +++TA Y PDG+ +VG+
Sbjct: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
Query: 446 SGECRFYDQSGENIQLDKELFMQGK--KSAVHRVNSLQXXXXXXXXXXXXXXXXXXXVAD 503
G C YD S + K++ +Q K KS ++ Q V D
Sbjct: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
Query: 504 GVDIIQKFEG 513
G +++ KF+G
Sbjct: 123 GFELVHKFKG 132
>Os07g0205200 Similar to Transcription initiation factor TFIID subunit 5
(Transcription initiation factor TFIID 100 kDa subunit)
(TAF(II)100) (TAFII-100) (TAFII100)
Length = 293
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 101/251 (40%), Gaps = 17/251 (6%)
Query: 224 IGIPSRTKVQHRKKKTMEFSAVHLGQE-------IQAHKGLIKVMKFSPSGWYLATGGED 276
IG PS+ + + V E Q H G + FSP G +L + D
Sbjct: 4 IGQPSKASCSQGENGPSQIERVSTSDEARKSCTLFQGHSGPVYSAMFSPIGDFLLSSSAD 63
Query: 277 CIVRIWQIMEVEASSKLHGGDNPQNYDDKITIIKTELGRGKNHALAVVPKKGFRISETPL 336
+R+W ++ A+ + G N +D + + + + A + PL
Sbjct: 64 STIRLWNT-KLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMD---KIQPL 119
Query: 337 HEFQGHTDDILDMAWS-ESDYLLTSSKDKMVRLWKVGCDGCLGLF-KHKDYVTCVQFNPI 394
GH D+ + W +Y+ T S DK VRLW V C+ +F H+ V + +P
Sbjct: 120 RIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGHRSMVLSLAMSP- 178
Query: 395 DERYFISGSIDGKVRVWDALDKRVVD-WTDTRKIITALSYQPDGKGFIVGTTSGECRFYD 453
D RY SG DG + +WD R V + +L+Y +G G+ + +D
Sbjct: 179 DGRYMASGDEDGTIMMWDISSGRCVSPLVGHNSCVWSLAYSCEGALLASGSADCTVKLWD 238
Query: 454 --QSGENIQLD 462
S + +++D
Sbjct: 239 VASSTKTLKMD 249
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,918,855
Number of extensions: 897481
Number of successful extensions: 2797
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 2761
Number of HSP's successfully gapped: 13
Length of query: 680
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 572
Effective length of database: 11,396,689
Effective search space: 6518906108
Effective search space used: 6518906108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)