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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0568400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Quinoprotein amine dehydrogenase, beta chain-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.07 (0.0233) R2 : 0.474
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.12 (0.0607) R2dC : 0.394 R2C : 0.358
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.434 (0.049) R2dN8 : 0.117 R2N8 : 0.0805
σ : 0.44
deviance : 88.28
__
_____
C
peak time of C : 7.01
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
79.29 0.418 9.01 0.469 1.09 -0.61 0.396 1.13 -0.236 6.79 25.5 3748 -- --
81.25 0.42 9.03 0.233 1.1 -0.454 0.381 -- -0.31 6.68 24.8 3873 -- --
79.65 0.416 9.01 0.464 1.09 -0.604 -- 1.08 -0.244 6.75 25.6 3827 -- --
80.54 0.418 9.04 0.207 1.12 -0.543 -- -- -0.321 6.75 25.6 3826 -- --
112.13 0.493 9 0.638 -- -0.946 -- 1.55 -0.0839 -- 25.8 488 -- --
87.84 0.439 9.07 -0.0332 1.12 -- 0.4 -- -0.436 7.04 -- -- -- --
88.26 0.44 9.07 -0.0258 1.12 -- -- -- -0.437 7.01 -- -- -- --
110.58 0.49 9.03 0.17 -- -0.844 -- -- -0.108 -- 25.7 420 -- --
81.15 0.42 9.05 -- 1.09 -0.491 -- -- -0.351 6.79 25.5 3714 -- --
153.99 0.58 9.1 -0.00327 -- -- -- -- -0.416 -- -- -- -- --
88.28 0.44 9.07 -- 1.12 -- -- -- -0.434 7.01 -- -- -- --
111.71 0.492 9.03 -- -- -0.816 -- -- -0.117 -- 25.6 404 -- --
153.99 0.579 9.1 -- -- -- -- -- -0.416 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.45 temperature 15.0 270 > th dose dependent rect. 23 3
2 76.58 temperature 20.0 270 > th dose independent rect. 23 3
5 76.87 temperature 15.0 270 > th dose dependent rect. 22 5
10 77.22 temperature 20.0 90 > th dose independent rect. 23 6
11 77.24 radiation 1.0 43200 < th dose dependent rect. 1 3
19 77.43 temperature 10.0 270 > th dose dependent rect. 22 18
20 77.46 temperature 15.0 10 > th dose dependent rect. 24 5
21 77.46 temperature 10.0 270 > th dose dependent rect. 21 20
23 77.51 atmosphere 995.0 10 > th dose dependent rect. 5 19
28 77.65 temperature 10.0 10 > th dose dependent rect. 24 18
31 77.70 temperature 10.0 270 > th dose dependent rect. 7 20
34 77.72 atmosphere 995.0 90 > th dose dependent rect. 5 18
39 77.76 radiation 10.0 43200 < th dose dependent rect. 1 1
45 77.87 temperature 20.0 10 > th dose independent rect. 24 5
81 78.40 humidity 90.0 4320 > th dose dependent rect. 6 1
117 78.79 temperature 30.0 4320 < th dose independent rect. 14 1
129 78.93 radiation 1.0 10 < th dose dependent rect. 24 17
140 78.97 temperature 25.0 4320 < th dose independent rect. 19 6
148 79.01 atmosphere 1015.0 10 < th dose dependent rect. 24 18
156 79.05 radiation 1.0 10 < th dose dependent rect. 17 7
157 79.06 temperature 30.0 4320 > th dose independent rect. 14 1
158 79.06 atmosphere 995.0 10 > th dose independent rect. 5 19
161 79.07 humidity 80.0 10 > th dose independent rect. 24 5
170 79.10 temperature 25.0 4320 > th dose independent rect. 19 6
172 79.11 radiation 1.0 14400 > th dose independent rect. 18 11
191 79.20 atmosphere 995.0 270 > th dose independent rect. 2 21
193 79.21 humidity 80.0 270 > th dose independent rect. 23 3
203 79.25 temperature 25.0 4320 > th dose independent rect. 19 3
204 79.26 temperature 25.0 4320 < th dose independent rect. 20 2
210 79.27 temperature 25.0 4320 < th dose independent rect. 15 11
235 79.33 temperature 25.0 4320 > th dose independent rect. 15 11
239 79.33 radiation 1.0 10 < th dose dependent rect. 24 6
247 79.35 radiation 1.0 10 < th dose dependent rect. 24 14
251 79.36 temperature 25.0 4320 < th dose independent rect. 23 1
269 79.38 temperature 30.0 270 < th dose dependent rect. 2 21
278 79.40 atmosphere 995.0 270 > th dose independent rect. 3 19
281 79.41 temperature 25.0 4320 < th dose independent sin 15 NA
287 79.43 radiation 1.0 14400 > th dose independent rect. 18 1
289 79.43 atmosphere 1010.0 270 < th dose independent rect. 23 3
304 79.44 temperature 20.0 270 > th dose independent rect. 22 18
309 79.45 temperature 30.0 10 < th dose dependent rect. 5 19
310 79.46 temperature 25.0 4320 > th dose independent sin 15 NA
314 79.46 radiation 1.0 10 < th dose independent rect. 24 16
317 79.47 radiation 1.0 10 < th dose independent rect. 24 6
322 79.48 radiation 1.0 30 < th dose independent rect. 17 7
333 79.50 wind 9.0 270 < th dose dependent rect. 23 3
338 79.51 wind 3.0 270 < th dose independent rect. 23 3
346 79.52 radiation 10.0 1440 < th dose independent rect. 16 1
350 79.52 temperature 10.0 270 > th dose dependent rect. 7 10
354 79.53 atmosphere 995.0 90 > th dose independent rect. 5 18
363 79.54 wind 5.0 10 < th dose independent rect. 5 19
370 79.55 temperature 20.0 4320 > th dose dependent rect. 23 1
391 79.58 wind 3.0 10 < th dose independent rect. 24 5
404 79.60 radiation 1.0 90 < th dose independent rect. 23 17
417 79.63 radiation 40.0 4320 < th dose dependent rect. 18 7
422 79.64 atmosphere 1010.0 90 < th dose independent rect. 23 6
425 79.64 temperature 20.0 270 > th dose independent rect. 21 20
427 79.65 precipitation 0.1 270 < th dose independent rect. 23 3
430 79.65 precipitation 0.1 270 < th dose dependent rect. 23 3
444 79.67 atmosphere 1010.0 10 < th dose independent rect. 24 5
448 79.67 radiation 1.0 10 < th dose independent rect. 24 14
453 79.68 wind 7.0 10 < th dose independent rect. 24 5
458 79.68 humidity 50.0 270 > th dose dependent rect. 23 3
471 79.71 temperature 10.0 270 > th dose independent rect. 23 3
473 79.71 temperature 30.0 270 < th dose independent rect. 23 3
474 79.71 humidity 50.0 270 > th dose independent rect. 23 3
477 79.71 atmosphere 995.0 270 > th dose independent rect. 23 3
478 79.71 radiation 1.0 270 < th dose independent rect. 23 3
484 79.71 temperature 10.0 10 > th dose independent rect. 24 5
486 79.71 temperature 30.0 10 < th dose independent rect. 24 5
487 79.71 humidity 50.0 10 > th dose independent rect. 24 5
490 79.71 atmosphere 995.0 10 > th dose independent rect. 24 5
500 79.71 temperature 10.0 10 > th dose independent rect. 5 19
502 79.71 temperature 10.0 270 > th dose independent rect. 2 21
503 79.71 radiation 1.0 270 < th dose dependent rect. 23 3
527 79.73 humidity 90.0 14400 > th dose dependent rect. 22 2
529 79.73 temperature 30.0 270 < th dose dependent rect. 17 17
540 79.75 humidity 90.0 43200 > th dose independent rect. 13 2
549 79.75 wind 9.0 270 < th dose dependent rect. 22 5
568 79.78 wind 3.0 270 < th dose independent rect. 24 1
585 79.80 atmosphere 995.0 43200 > th dose independent rect. 12 1
591 79.81 wind 1.0 270 > th dose independent rect. 23 3
610 79.84 wind 9.0 10 < th dose dependent rect. 24 5
611 79.84 humidity 50.0 10 > th dose dependent rect. 24 5
631 79.87 humidity 80.0 270 > th dose independent rect. 24 1
656 79.90 atmosphere 995.0 43200 < th dose independent rect. 8 7
658 79.90 wind 9.0 10 < th dose independent rect. 5 19
659 79.90 wind 9.0 270 < th dose independent rect. 2 21
666 79.91 humidity 80.0 270 > th dose independent rect. 22 5
681 79.92 wind 3.0 90 < th dose independent rect. 23 6
684 79.92 radiation 1.0 90 < th dose independent rect. 23 8
692 79.92 humidity 90.0 14400 > th dose dependent rect. 21 4
701 79.93 precipitation 0.1 10 < th dose independent rect. 24 5
708 79.93 precipitation 0.1 10 < th dose dependent rect. 24 5
755 79.98 radiation 10.0 4320 < th dose independent rect. 16 5
770 79.99 atmosphere 995.0 43200 > th dose independent rect. 8 7
772 79.99 temperature 30.0 270 < th dose independent rect. 3 10
812 80.02 radiation 1.0 10 < th dose dependent rect. 6 18
816 80.03 temperature 20.0 10 > th dose independent rect. 14 15
818 80.03 atmosphere 995.0 43200 < th dose dependent rect. 13 3
828 80.04 precipitation 0.1 270 < th dose independent rect. 22 5
833 80.04 precipitation 0.1 270 < th dose dependent rect. 22 5
844 80.05 temperature 20.0 10 > th dose independent rect. 24 18
845 80.05 precipitation 0.1 10 < th dose independent rect. 5 19
849 80.05 humidity 50.0 270 > th dose dependent rect. 22 5
863 80.05 precipitation 0.1 10 < th dose dependent rect. 5 19
872 80.07 precipitation 0.1 43200 < th dose independent rect. 17 1
876 80.07 precipitation 0.1 43200 < th dose dependent rect. 17 1
877 80.08 wind 7.0 43200 > th dose independent rect. 6 1
881 80.08 temperature 10.0 270 > th dose independent rect. 22 5
882 80.08 temperature 30.0 270 < th dose independent rect. 22 5
883 80.08 humidity 50.0 270 > th dose independent rect. 22 5
886 80.08 atmosphere 995.0 270 > th dose independent rect. 22 5
887 80.08 radiation 1.0 270 < th dose independent rect. 22 5
894 80.08 radiation 20.0 4320 < th dose independent rect. 15 16
895 80.08 temperature 10.0 270 > th dose independent rect. 3 19
899 80.08 radiation 1.0 270 < th dose dependent rect. 22 5
906 80.09 wind 9.0 270 < th dose independent rect. 22 5
909 80.09 temperature 25.0 4320 > th dose dependent rect. 14 1
913 80.10 radiation 1.0 90 < th dose independent rect. 23 14
916 80.10 temperature 30.0 30 < th dose independent rect. 5 19
919 80.10 precipitation 0.1 43200 > th dose dependent rect. 17 1
936 80.12 precipitation 0.1 43200 > th dose independent rect. 17 1
950 80.13 radiation 1.0 14400 < th dose independent rect. 18 11
951 80.13 radiation 1.0 90 < th dose independent rect. 23 11
974 80.14 precipitation 0.1 270 < th dose independent rect. 2 21
977 80.14 atmosphere 995.0 43200 < th dose dependent rect. 11 8
986 80.14 precipitation 0.1 270 < th dose dependent rect. 2 21