Os03g0115400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os03g0115400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.65 | 0.197 | 10.6 | 0.618 | 0.721 | -0.68 | 0.258 | -0.0719 | -0.0683 | 4.13 | 26.3 | 10 | -- | -- |
| 17.64 | 0.197 | 10.6 | 0.609 | 0.72 | -0.672 | 0.228 | -- | -0.0697 | 4.13 | 26.36 | 7 | -- | -- |
| 17.77 | 0.198 | 10.6 | 0.599 | 0.718 | -0.663 | -- | 0.0613 | -0.0717 | 4.16 | 26.31 | 6 | -- | -- |
| 17.78 | 0.198 | 10.6 | 0.608 | 0.719 | -0.667 | -- | -- | -0.0696 | 4.16 | 26.31 | 6 | -- | -- |
| 40.2 | 0.297 | 10.6 | 0.696 | -- | -0.396 | -- | 0.049 | 0.0316 | -- | 23.59 | 2 | -- | -- |
| 24.4 | 0.232 | 10.6 | 0.764 | 0.585 | -- | 0.13 | -- | 0.0762 | 4.8 | -- | -- | -- | -- |
| 24.44 | 0.232 | 10.6 | 0.764 | 0.586 | -- | -- | -- | 0.0755 | 4.82 | -- | -- | -- | -- |
| 40.2 | 0.297 | 10.6 | 0.701 | -- | -0.395 | -- | -- | 0.0309 | -- | 23.8 | 2 | -- | -- |
| 26.64 | 0.242 | 10.6 | -- | 0.796 | -0.899 | -- | -- | -0.184 | 3.96 | 26.7 | 12 | -- | -- |
| 42.61 | 0.305 | 10.6 | 0.786 | -- | -- | -- | -- | 0.0907 | -- | -- | -- | -- | -- |
| 39.82 | 0.295 | 10.6 | -- | 0.6 | -- | -- | -- | -0.00954 | 4.79 | -- | -- | -- | -- |
| 52.21 | 0.337 | 10.6 | -- | -- | -0.629 | -- | -- | -0.0803 | -- | 24 | 2 | -- | -- |
| 58.9 | 0.358 | 10.6 | -- | -- | -- | -- | -- | 0.00355 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.07 | temperature | 10 | 10 | > th | dose dependent | sin | 10 | NA |
| 3 | 17.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 7 | 17.16 | temperature | 30 | 10 | < th | dose dependent | sin | 10 | NA |
| 8 | 17.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 16 |
| 10 | 17.22 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 12 | 17.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 30 | 17.44 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 15 |
| 34 | 17.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 44 | 17.54 | temperature | 20 | 30 | > th | dose dependent | rect. | 18 | 15 |
| 70 | 17.65 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 83 | 17.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 95 | 17.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 114 | 17.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 124 | 17.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 129 | 17.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 132 | 17.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 152 | 17.87 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 184 | 17.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 16 |
| 203 | 17.91 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 221 | 17.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 13 |
| 249 | 17.95 | temperature | 10 | 720 | > th | dose dependent | sin | 16 | NA |
| 251 | 17.95 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 282 | 17.97 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 301 | 17.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 303 | 17.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 304 | 17.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 306 | 17.98 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 6 |
| 312 | 17.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 322 | 17.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 19 | 18 |
| 328 | 17.99 | temperature | 10 | 1440 | > th | dose dependent | sin | 7 | NA |
| 342 | 17.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 353 | 17.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 16 |
| 390 | 18.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 15 |
| 410 | 18.00 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 19 |
| 419 | 18.01 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 429 | 18.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 451 | 18.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 17 |
| 478 | 18.02 | temperature | 30 | 1440 | < th | dose dependent | sin | 7 | NA |
| 536 | 18.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 621 | 18.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 655 | 18.06 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 682 | 18.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 13 |
| 704 | 18.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 793 | 18.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 795 | 18.08 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 843 | 18.09 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 879 | 18.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 986 | 18.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 996 | 18.13 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |