Os04g0529400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os04g0529400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 199.69 | 0.664 | 3.96 | -0.843 | 1.93 | -0.455 | -1.96 | -2.02 | 0.246 | 7.75 | 89 | 409 | -- | -- |
| 211.29 | 0.677 | 3.98 | -0.721 | 1.91 | -0.494 | -1.05 | -- | 0.257 | 7.87 | 89.38 | 350 | -- | -- |
| 208.51 | 0.673 | 3.95 | -0.843 | 1.93 | -0.467 | -- | -1.36 | 0.257 | 7.86 | 90 | 368 | -- | -- |
| 214.64 | 0.682 | 3.98 | -0.735 | 1.93 | -0.487 | -- | -- | 0.266 | 7.87 | 89.77 | 350 | -- | -- |
| 315.19 | 0.827 | 4.04 | -0.645 | -- | -1.86 | -- | -0.51 | 0.242 | -- | 79 | 610 | -- | -- |
| 219.71 | 0.695 | 3.99 | -0.622 | 2.2 | -- | -1.07 | -- | 0.188 | 7.55 | -- | -- | -- | -- |
| 222.91 | 0.699 | 3.99 | -0.647 | 2.2 | -- | -- | -- | 0.189 | 7.54 | -- | -- | -- | -- |
| 315.58 | 0.827 | 4.03 | -0.557 | -- | -1.84 | -- | -- | 0.261 | -- | 79.3 | 609 | -- | -- |
| 228.55 | 0.704 | 3.96 | -- | 1.98 | -0.389 | -- | -- | 0.33 | 7.82 | 89.5 | 349 | -- | -- |
| 482.85 | 1.03 | 4.04 | -0.615 | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
| 233.96 | 0.716 | 3.97 | -- | 2.2 | -- | -- | -- | 0.261 | 7.56 | -- | -- | -- | -- |
| 321.98 | 0.836 | 4.03 | -- | -- | -1.91 | -- | -- | 0.284 | -- | 77.98 | 614 | -- | -- |
| 492.83 | 1.04 | 4.03 | -- | -- | -- | -- | -- | 0.292 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 195.16 | humidity | 90 | 270 | > th | dose independent | rect. | 2 | 19 |
| 4 | 196.13 | humidity | 80 | 270 | > th | dose dependent | rect. | 2 | 19 |
| 12 | 197.32 | humidity | 90 | 720 | < th | dose independent | rect. | 6 | 13 |
| 19 | 197.68 | temperature | 15 | 14400 | > th | dose independent | rect. | 11 | 16 |
| 20 | 197.72 | temperature | 15 | 14400 | < th | dose independent | rect. | 12 | 15 |
| 28 | 197.86 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 10 |
| 32 | 197.93 | humidity | 90 | 270 | > th | dose independent | sin | 23 | NA |
| 46 | 198.06 | temperature | 15 | 14400 | < th | dose independent | sin | 17 | NA |
| 48 | 198.07 | temperature | 15 | 14400 | > th | dose independent | sin | 18 | NA |
| 70 | 198.23 | radiation | 30 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 77 | 198.28 | temperature | 15 | 14400 | < th | dose independent | rect. | 8 | 19 |
| 136 | 198.65 | humidity | 90 | 720 | > th | dose independent | rect. | 8 | 11 |
| 144 | 198.73 | temperature | 15 | 14400 | > th | dose independent | sin | 23 | NA |
| 148 | 198.77 | radiation | 1 | 720 | < th | dose dependent | sin | 1 | NA |
| 176 | 198.94 | temperature | 15 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 185 | 199.01 | humidity | 90 | 720 | < th | dose independent | sin | 23 | NA |
| 189 | 199.04 | temperature | 15 | 14400 | < th | dose independent | sin | 0 | NA |
| 198 | 199.08 | radiation | 1 | 720 | < th | dose independent | sin | 1 | NA |
| 208 | 199.12 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 211 | 199.13 | temperature | 15 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 217 | 199.19 | temperature | 15 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 226 | 199.24 | temperature | 15 | 14400 | < th | dose independent | rect. | 2 | 21 |
| 237 | 199.29 | temperature | 15 | 14400 | < th | dose independent | no | NA | NA |
| 243 | 199.33 | temperature | 15 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 258 | 199.41 | temperature | 15 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 262 | 199.42 | temperature | 15 | 14400 | < th | dose independent | rect. | 13 | 23 |
| 290 | 199.49 | temperature | 15 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 306 | 199.55 | humidity | 90 | 720 | < th | dose independent | rect. | 8 | 10 |
| 320 | 199.63 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 333 | 199.67 | humidity | 90 | 720 | > th | dose independent | rect. | 9 | 6 |
| 344 | 199.73 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 377 | 199.86 | humidity | 90 | 720 | > th | dose independent | rect. | 8 | 8 |
| 392 | 199.92 | temperature | 15 | 14400 | > th | dose independent | rect. | 8 | 13 |
| 455 | 200.21 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 464 | 200.27 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 466 | 200.27 | humidity | 70 | 270 | > th | dose dependent | rect. | 2 | 10 |
| 487 | 200.39 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 493 | 200.41 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 505 | 200.47 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 21 |
| 565 | 200.75 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 573 | 200.78 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 595 | 200.91 | temperature | 15 | 14400 | > th | dose independent | no | NA | NA |
| 600 | 200.93 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 613 | 200.99 | wind | 1 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 622 | 201.03 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 22 |
| 625 | 201.04 | temperature | 15 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 630 | 201.08 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 12 |
| 631 | 201.08 | temperature | 15 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 632 | 201.08 | temperature | 15 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 666 | 201.19 | humidity | 90 | 270 | > th | dose independent | rect. | 2 | 10 |
| 678 | 201.21 | humidity | 90 | 270 | < th | dose independent | rect. | 21 | 18 |
| 727 | 201.40 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 15 |
| 739 | 201.45 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 11 |
| 749 | 201.48 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 766 | 201.54 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 782 | 201.61 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 785 | 201.64 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 17 |
| 801 | 201.69 | humidity | 90 | 720 | > th | dose dependent | rect. | 9 | 6 |
| 827 | 201.77 | humidity | 80 | 270 | > th | dose dependent | sin | 3 | NA |
| 839 | 201.82 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 854 | 201.87 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 20 |
| 937 | 202.14 | humidity | 90 | 270 | > th | dose dependent | sin | 23 | NA |
| 956 | 202.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 972 | 202.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 992 | 202.34 | wind | 1 | 14400 | > th | dose independent | rect. | 20 | 10 |