BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0529400 Os04g0529400|AK099627
(150 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G15470.1 | chr3:5216630-5219868 REVERSE LENGTH=884 210 2e-55
AT5G54200.1 | chr5:21993565-21997076 REVERSE LENGTH=826 204 2e-53
AT2G37670.1 | chr2:15797384-15800536 REVERSE LENGTH=904 194 2e-50
AT5G02430.1 | chr5:526592-529839 FORWARD LENGTH=906 168 8e-43
AT5G53500.1 | chr5:21726167-21728524 REVERSE LENGTH=655 150 3e-37
AT5G42010.1 | chr5:16802280-16804757 FORWARD LENGTH=710 148 8e-37
AT5G24320.2 | chr5:8284858-8287651 REVERSE LENGTH=699 131 2e-31
AT1G64610.1 | chr1:23998920-24001297 REVERSE LENGTH=648 129 5e-31
AT1G48870.1 | chr1:18072325-18074457 REVERSE LENGTH=594 115 1e-26
AT4G02730.1 | chr4:1207759-1209066 FORWARD LENGTH=334 50 5e-07
>AT3G15470.1 | chr3:5216630-5219868 REVERSE LENGTH=884
Length = 883
Score = 210 bits (534), Expect = 2e-55, Method: Composition-based stats.
Identities = 102/132 (77%), Positives = 119/132 (90%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTCIQFNPVDDRYFISGSLD KVR+WSIP R++VDW DLHEMVT+ACYTPDGQ LVGS+
Sbjct: 556 VTCIQFNPVDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHEMVTSACYTPDGQGVLVGSY 615
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
KGSC +Y SDNKL QK QI+LQNKK+K++QKKITGFQF+PGSSS+VL+TS+DSRIRVVD
Sbjct: 616 KGSCRMYSASDNKLQQKSQINLQNKKKKAHQKKITGFQFVPGSSSEVLVTSSDSRIRVVD 675
Query: 123 GFELVHKFKGIK 134
G +LV+K KG +
Sbjct: 676 GTDLVNKLKGFR 687
>AT5G54200.1 | chr5:21993565-21997076 REVERSE LENGTH=826
Length = 825
Score = 204 bits (518), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 99/132 (75%), Positives = 119/132 (90%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTCIQFNPVDD YFISGSLD KVRIWSIP ++VDWNDLHEMVTAACYTPDGQ ALVGS+
Sbjct: 511 VTCIQFNPVDDNYFISGSLDAKVRIWSIPDHQVVDWNDLHEMVTAACYTPDGQGALVGSY 570
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
KG+C +Y+T DNKL Q+++I+L+N+K+K++ KKITGFQF+ GSSS+VL+TSADSR RVVD
Sbjct: 571 KGTCCLYNTHDNKLQQRREINLKNRKKKTHHKKITGFQFVAGSSSEVLVTSADSRTRVVD 630
Query: 123 GFELVHKFKGIK 134
G +LVHKFKG +
Sbjct: 631 GVDLVHKFKGFR 642
>AT2G37670.1 | chr2:15797384-15800536 REVERSE LENGTH=904
Length = 903
Score = 194 bits (492), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 88/138 (63%), Positives = 110/138 (79%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTCIQF+PVD+ YF+SGSLD K+RIWSI R +V+W+DLHEMVTAACYTPDGQ AL+GSH
Sbjct: 549 VTCIQFSPVDENYFLSGSLDAKIRIWSIQDRHVVEWSDLHEMVTAACYTPDGQGALIGSH 608
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
KG C YDT D KL Q QID+Q+ K+ ++KIT FQF P + S+VL+TSADSRIR++D
Sbjct: 609 KGICRAYDTEDCKLSQTNQIDVQSNKKSQAKRKITSFQFSPVNPSEVLVTSADSRIRILD 668
Query: 123 GFELVHKFKGIKFCALEL 140
G E++HKFKG + +L
Sbjct: 669 GSEVIHKFKGFRNTCSQL 686
>AT5G02430.1 | chr5:526592-529839 FORWARD LENGTH=906
Length = 905
Score = 168 bits (426), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 86/132 (65%), Positives = 102/132 (77%), Gaps = 1/132 (0%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTC+QFNP+D+ YFISGSLD K+RIW+I R++V+WNDL EMVTA CYTPDGQ A VGS
Sbjct: 562 VTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDGQAAFVGSI 621
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
G C +Y D KL Q QIDLQ K+K+ KKIT FQF P + S+VL+TSADSRIRV+D
Sbjct: 622 NGHCRLYSAEDCKLEQTNQIDLQ-NKKKAQAKKITAFQFSPINPSEVLVTSADSRIRVLD 680
Query: 123 GFELVHKFKGIK 134
G ELV KF+G K
Sbjct: 681 GTELVQKFRGFK 692
>AT5G53500.1 | chr5:21726167-21728524 REVERSE LENGTH=655
Length = 654
Score = 150 bits (379), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 69/131 (52%), Positives = 95/131 (72%), Gaps = 1/131 (0%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VT +QFNPV++ YF+SGS+D KVRIW+I G +VDW DL ++++A CY PDGQ ++GS
Sbjct: 371 VTSVQFNPVNENYFMSGSIDGKVRIWNISGCSVVDWADLKDIISAVCYRPDGQGGIIGSL 430
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
GSC ++ S L QI L NKK+ SN K+ITGFQFLP +KVL+ SADS++R++
Sbjct: 431 NGSCRFFNMSGEFLELDSQIHLHNKKKSSN-KRITGFQFLPQEPTKVLVVSADSKVRILQ 489
Query: 123 GFELVHKFKGI 133
G +V K+KG+
Sbjct: 490 GNNVVRKYKGV 500
>AT5G42010.1 | chr5:16802280-16804757 FORWARD LENGTH=710
Length = 709
Score = 148 bits (374), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 92/129 (71%), Gaps = 1/129 (0%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTC+ FNPVDD YFISGS+D KVRIW + +VD+ D+ ++VTA CY PDG+ A+VGS
Sbjct: 407 VTCVAFNPVDDNYFISGSIDGKVRIWDVSQFRVVDYTDIRQIVTALCYRPDGKGAVVGSM 466
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
G C Y T+DN+L + I L KK+ N K+ITGFQF PG S KV++TSADS+IR++
Sbjct: 467 TGECRFYHTTDNQLQLDRDISLHGKKKVPN-KRITGFQFFPGDSDKVMVTSADSQIRIIC 525
Query: 123 GFELVHKFK 131
G + + K K
Sbjct: 526 GVDTICKLK 534
>AT5G24320.2 | chr5:8284858-8287651 REVERSE LENGTH=699
Length = 698
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 88/134 (65%), Gaps = 5/134 (3%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VT +QFNPVDD +FISGS+D KVRIWS ++VDW D +VTA CY PDGQ ++G+
Sbjct: 399 VTSVQFNPVDDDHFISGSIDGKVRIWSASQCQVVDWADARGIVTAVCYQPDGQAVIIGTL 458
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFL----PGSSSKVLITSADSRI 118
C Y+ S + L I L NKK+ SN K+I GFQFL S+V++ SADS++
Sbjct: 459 TSDCRFYNVSGHCLQLDGHICLHNKKKSSN-KRIIGFQFLLQFDSTDPSRVMVASADSQV 517
Query: 119 RVVDGFELVHKFKG 132
R++ G +VHK+KG
Sbjct: 518 RIISGRNVVHKYKG 531
>AT1G64610.1 | chr1:23998920-24001297 REVERSE LENGTH=648
Length = 647
Score = 129 bits (325), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 93/132 (70%), Gaps = 3/132 (2%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTC+ FNPVDD YFISGS+D KVRIW + +VD+ D+ ++VTA CY PD + A++GS
Sbjct: 365 VTCVAFNPVDDNYFISGSIDGKVRIWDVTRCRVVDYTDIRDIVTAVCYRPDAKGAVIGSM 424
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLP--GSSSKVLITSADSRIRV 120
G+C Y +N+L ++I++ KK+ ++ K+I+G Q+LP S KV++TSADS+IR+
Sbjct: 425 TGNCRFYHIFENQLQMDQEINVHGKKKVAS-KRISGLQYLPSDSDSDKVMVTSADSQIRI 483
Query: 121 VDGFELVHKFKG 132
+ G +++ K K
Sbjct: 484 ICGEDVICKLKA 495
>AT1G48870.1 | chr1:18072325-18074457 REVERSE LENGTH=594
Length = 593
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 80/130 (61%), Gaps = 6/130 (4%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTC++FNPV+ F SGS+D K RIW + +V W D+ + ++A Y P+G +VG
Sbjct: 315 VTCVEFNPVNKNNFASGSIDGKARIWGLSEERVVAWTDVRDSISAISYQPNGNGFVVGCI 374
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
G+C Y DN ++ +QI ++ + R IT +F PGSS K+L++S DS++R+ D
Sbjct: 375 TGNCRFYQILDNDVIMDEQILIRGRNR------ITAVEFCPGSSEKILVSSEDSKVRIFD 428
Query: 123 GFELVHKFKG 132
+++HKFK
Sbjct: 429 KTQMIHKFKA 438
>AT4G02730.1 | chr4:1207759-1209066 FORWARD LENGTH=334
Length = 333
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEM-VTAACYTPDGQRALVGS 61
V C+ FNP + +SGS DE +RIW + + V H M +++ + DG + S
Sbjct: 131 VFCVNFNPPSN-LIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSAS 189
Query: 62 HKGSCHIYDTSDNKLLQ 78
H GSC I+D + L+
Sbjct: 190 HDGSCKIWDAKEGTCLK 206
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,419,423
Number of extensions: 137865
Number of successful extensions: 772
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 777
Number of HSP's successfully gapped: 11
Length of query: 150
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 60
Effective length of database: 8,639,129
Effective search space: 518347740
Effective search space used: 518347740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 107 (45.8 bits)