BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0529400 Os04g0529400|AK099627
(150 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0529400 WD40-like domain containing protein 310 4e-85
Os04g0678300 WD40-like domain containing protein 224 2e-59
Os11g0187000 WD40-like domain containing protein 200 3e-52
Os04g0568400 Quinoprotein amine dehydrogenase, beta chain-l... 141 1e-34
Os03g0115400 WD40-like domain containing protein 137 3e-33
Os02g0638900 WD40-like domain containing protein 134 2e-32
Os12g0178633 Quinonprotein alcohol dehydrogenase-like domai... 124 3e-29
Os02g0539900 WD40-like domain containing protein 123 5e-29
Os04g0417800 WD40-like domain containing protein 116 6e-27
>Os04g0529400 WD40-like domain containing protein
Length = 150
Score = 310 bits (793), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 150/150 (100%), Positives = 150/150 (100%)
Query: 1 ISVTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVG 60
ISVTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVG
Sbjct: 1 ISVTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVG 60
Query: 61 SHKGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRV 120
SHKGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRV
Sbjct: 61 SHKGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRV 120
Query: 121 VDGFELVHKFKGIKFCALELIHIRLFLFKV 150
VDGFELVHKFKGIKFCALELIHIRLFLFKV
Sbjct: 121 VDGFELVHKFKGIKFCALELIHIRLFLFKV 150
>Os04g0678300 WD40-like domain containing protein
Length = 819
Score = 224 bits (571), Expect = 2e-59, Method: Composition-based stats.
Identities = 102/132 (77%), Positives = 118/132 (89%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTCIQFNPVDD +FISGSLDEKVRIW++ R+I DWNDLHEMVTAACY+PDGQ ALVGSH
Sbjct: 497 VTCIQFNPVDDNFFISGSLDEKVRIWNVHDRKIEDWNDLHEMVTAACYSPDGQVALVGSH 556
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
KGSCH++DT++ KL K QI+L+ +K+KS QKKITGFQF PGSSS+VLITSADSRIRVV+
Sbjct: 557 KGSCHLFDTTEKKLQYKSQIELRIRKKKSGQKKITGFQFAPGSSSEVLITSADSRIRVVN 616
Query: 123 GFELVHKFKGIK 134
G ELVHKFKG +
Sbjct: 617 GDELVHKFKGFR 628
>Os11g0187000 WD40-like domain containing protein
Length = 1391
Score = 200 bits (509), Expect = 3e-52, Method: Composition-based stats.
Identities = 90/133 (67%), Positives = 111/133 (83%), Gaps = 1/133 (0%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTC+QFNPVDD YFISGSLD KVRIWS+ R++VDW+DL +MVTAACYTPDGQ A+VGSH
Sbjct: 576 VTCVQFNPVDDGYFISGSLDSKVRIWSVAERQVVDWSDLDDMVTAACYTPDGQAAIVGSH 635
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQ-NKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVV 121
KGSC Y T+D KL Q+ QID+ +KKRKS+ KKITGFQF PG+ S++L+T+ADS+IRV
Sbjct: 636 KGSCRFYKTADCKLNQEAQIDMNISKKRKSHAKKITGFQFAPGNPSEILVTTADSQIRVF 695
Query: 122 DGFELVHKFKGIK 134
+G ++ KFKG K
Sbjct: 696 NGITVLQKFKGFK 708
>Os04g0568400 Quinoprotein amine dehydrogenase, beta chain-like domain containing
protein
Length = 698
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 97/138 (70%), Gaps = 1/138 (0%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTC+QFN D+ FISGS+D K+R+W I +VDW D+ ++VTA CY P G+ +VG+
Sbjct: 374 VTCVQFNLADENLFISGSIDGKIRVWDITRSSVVDWVDIRDIVTAVCYRPGGKGVVVGTI 433
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
G+C Y+ SDN L + QI L N K+KS+ K+ITGFQF P + SK+++TSADS+IR++D
Sbjct: 434 TGNCRFYEISDNLLKLETQIAL-NGKKKSSLKRITGFQFCPSNPSKLMVTSADSKIRILD 492
Query: 123 GFELVHKFKGIKFCALEL 140
G ++ + G++ + +L
Sbjct: 493 GTNVIQNYSGLRSGSCQL 510
>Os03g0115400 WD40-like domain containing protein
Length = 746
Score = 137 bits (345), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 91/132 (68%), Gaps = 1/132 (0%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTC+QF+P D YFISG +D VRIW + ++VDW D E++TA CY PDG+ A+VG+
Sbjct: 422 VTCVQFHPTSDNYFISGCIDGLVRIWDVRRCQVVDWADTKEIITAVCYRPDGKAAVVGTI 481
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
G+C YD S+N L + Q+ L N ++KS K+I GFQ+ P K+++TS DS++R++D
Sbjct: 482 TGNCRHYDASENHLELESQVAL-NGRKKSPLKRIIGFQYCPSDPKKLMVTSGDSQVRILD 540
Query: 123 GFELVHKFKGIK 134
G ++ +KG++
Sbjct: 541 GLHVISNYKGLR 552
>Os02g0638900 WD40-like domain containing protein
Length = 479
Score = 134 bits (337), Expect = 2e-32, Method: Composition-based stats.
Identities = 58/70 (82%), Positives = 64/70 (91%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTCIQFNPV+D+YFISGSLD+KVRIWSI R+IVDW DLHEM+TAACYTPDGQ ALVGSH
Sbjct: 389 VTCIQFNPVNDKYFISGSLDKKVRIWSIQERKIVDWIDLHEMITAACYTPDGQGALVGSH 448
Query: 63 KGSCHIYDTS 72
KG CH+YD S
Sbjct: 449 KGKCHVYDIS 458
>Os12g0178633 Quinonprotein alcohol dehydrogenase-like domain containing protein
Length = 627
Score = 124 bits (310), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 61/70 (87%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTCIQFNP DDR+FISGSLD KVR+WSIP R++VDW DL+EMVTAA YTPDGQ A++GSH
Sbjct: 354 VTCIQFNPADDRFFISGSLDAKVRLWSIPDRQVVDWTDLNEMVTAASYTPDGQGAIIGSH 413
Query: 63 KGSCHIYDTS 72
KGSC Y T+
Sbjct: 414 KGSCRFYKTT 423
>Os02g0539900 WD40-like domain containing protein
Length = 672
Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 90/134 (67%), Gaps = 5/134 (3%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTC+QFNPVD+RYFISGS+D KVR+W + + +VDW+D ++TA + PDG+ +VGS
Sbjct: 384 VTCVQFNPVDERYFISGSIDGKVRVWDVSDKRVVDWDDTKYIITAISHRPDGKGFVVGSV 443
Query: 63 KGSCHIYDTSD----NKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRI 118
KG C YD S + +++ ++ ++ K+R+ KIT QF G S+++ITS D +I
Sbjct: 444 KGRCRFYDQSGLFPLGRNIERNKL-MRIKRRRCAANKITNIQFSQGHPSRMIITSKDHKI 502
Query: 119 RVVDGFELVHKFKG 132
RV +G ++ KF+G
Sbjct: 503 RVSEGHKITQKFQG 516
>Os04g0417800 WD40-like domain containing protein
Length = 680
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 83/130 (63%), Gaps = 2/130 (1%)
Query: 3 VTCIQFNPVDDRYFISGSLDEKVRIWSIPGREIVDWNDLHEMVTAACYTPDGQRALVGSH 62
VTC+QFNP+D+RYFISGS+D KVR+W + +VDW D +++TA Y PDG+ +VG+
Sbjct: 386 VTCVQFNPIDERYFISGSIDGKVRVWDALDKRVVDWTDTRKIITALSYQPDGKGFIVGTT 445
Query: 63 KGSCHIYDTSDNKLLQKKQIDLQNKKRKSNQKKITGFQFLPGSSSKVLITSADSRIRVVD 122
G C YD S + K++ +Q K KS ++ Q SS++ ITS S+IRV D
Sbjct: 446 SGECRFYDQSGENIQLDKELFMQGK--KSAVHRVNSLQSRSSDSSRITITSTGSKIRVAD 503
Query: 123 GFELVHKFKG 132
G +++ KF+G
Sbjct: 504 GVDIIQKFEG 513
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.139 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,984,002
Number of extensions: 192834
Number of successful extensions: 738
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 736
Number of HSP's successfully gapped: 9
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 151 (62.8 bits)