Os02g0539900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
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Os02g0539900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.69 | 0.501 | 2.9 | -0.0781 | 0.124 | 0.729 | 0.352 | -3.01 | 0.103 | 6.56 | -0.0001532 | 3201 | -- | -- |
| 120.24 | 0.511 | 2.86 | -0.055 | 0.115 | 0.192 | 0.295 | -- | 0.082 | 6.1 | -0.1265 | 3473 | -- | -- |
| 113.98 | 0.497 | 2.91 | -0.0761 | 0.124 | 0.739 | -- | -3 | 0.102 | 6.56 | -0.008418 | 3182 | -- | -- |
| 120.3 | 0.511 | 2.85 | -0.0627 | 0.122 | 0.202 | -- | -- | 0.0794 | 7.68 | -0.08396 | 3474 | -- | -- |
| 114.8 | 0.499 | 2.91 | -0.0761 | -- | 0.739 | -- | -3 | 0.102 | -- | -0.008419 | 3182 | -- | -- |
| 120.82 | 0.515 | 2.86 | -0.011 | 0.127 | -- | 0.264 | -- | 0.0666 | 7.06 | -- | -- | -- | -- |
| 120.98 | 0.515 | 2.86 | -0.00507 | 0.128 | -- | -- | -- | 0.0665 | 7.7 | -- | -- | -- | -- |
| 121.16 | 0.513 | 2.86 | -0.0572 | -- | 0.199 | -- | -- | 0.0861 | -- | -0.04776 | 3473 | -- | -- |
| 120.37 | 0.511 | 2.85 | -- | 0.126 | 0.179 | -- | -- | 0.0889 | 7.73 | -0.1156 | 3473 | -- | -- |
| 121.86 | 0.516 | 2.86 | -0.0034 | -- | -- | -- | -- | 0.0683 | -- | -- | -- | -- | -- |
| 120.98 | 0.515 | 2.86 | -- | 0.128 | -- | -- | -- | 0.067 | 7.7 | -- | -- | -- | -- |
| 121.24 | 0.513 | 2.86 | -- | -- | 0.171 | -- | -- | 0.0882 | -- | -0.02294 | 3473 | -- | -- |
| 121.86 | 0.515 | 2.86 | -- | -- | -- | -- | -- | 0.0687 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.48 | temperature | 20.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 4 | 112.96 | radiation | 10.0 | 90 | < th | dose independent | rect. | 10 | 1 |
| 5 | 113.11 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 6 | 113.65 | temperature | 20.0 | 90 | < th | dose independent | rect. | 5 | 1 |
| 8 | 113.66 | temperature | 20.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 20 | 114.11 | wind | 5.0 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 22 | 114.22 | wind | 5.0 | 270 | > th | dose independent | rect. | 2 | 1 |
| 24 | 114.49 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 28 | 114.55 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 4 | 1 |
| 29 | 114.55 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 5 | 1 |
| 45 | 114.69 | wind | 5.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 54 | 114.86 | wind | 1.0 | 30 | > th | dose independent | rect. | 4 | 3 |
| 62 | 114.95 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 65 | 114.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 66 | 114.96 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 67 | 114.97 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 69 | 114.97 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 72 | 115.02 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 73 | 115.02 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 74 | 115.03 | wind | 1.0 | 90 | > th | dose dependent | rect. | 4 | 1 |
| 78 | 115.10 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 82 | 115.15 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 83 | 115.16 | wind | 5.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 93 | 115.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 95 | 115.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 100 | 115.27 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 101 | 115.27 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 104 | 115.30 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 6 | 3 |
| 106 | 115.31 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 7 | 1 |
| 113 | 115.33 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 117 | 115.36 | temperature | 25.0 | 720 | > th | dose independent | rect. | 4 | 1 |
| 130 | 115.39 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 134 | 115.39 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 135 | 115.39 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 136 | 115.40 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 139 | 115.40 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 154 | 115.42 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 157 | 115.42 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 159 | 115.42 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 15 | 4 |
| 163 | 115.44 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 173 | 115.47 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 182 | 115.50 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 184 | 115.50 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 2 |
| 197 | 115.53 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 207 | 115.53 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 5 |
| 220 | 115.57 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 229 | 115.60 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 230 | 115.60 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 4 |
| 239 | 115.62 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 11 |
| 242 | 115.64 | wind | 1.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 249 | 115.65 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 11 |
| 254 | 115.67 | wind | 1.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 268 | 115.69 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 11 |
| 269 | 115.69 | humidity | 90.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 274 | 115.69 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 11 |
| 310 | 115.76 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 332 | 115.81 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 356 | 115.87 | humidity | 90.0 | 10 | > th | dose independent | rect. | 6 | 1 |
| 371 | 115.90 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 11 | 8 |
| 375 | 115.90 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 11 | 8 |
| 410 | 116.00 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 2 | 3 |
| 429 | 116.03 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 5 | 7 |
| 480 | 116.07 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 16 |
| 516 | 116.14 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 2 | 10 |
| 518 | 116.14 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 23 | NA |
| 532 | 116.16 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 546 | 116.18 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 23 | NA |
| 563 | 116.19 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 587 | 116.21 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 23 | NA |
| 596 | 116.21 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 23 | NA |
| 622 | 116.23 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 19 | 17 |
| 717 | 116.30 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 722 | 116.30 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 871 | 116.30 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 876 | 116.30 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |