BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0854100 Os03g0854100|AK067615
(412 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0854100 Similar to ARF GAP-like zinc finger-containing... 741 0.0
Os10g0574800 Similar to ARF GAP-like zinc finger-containing... 484 e-137
Os03g0278400 Similar to ADP ribosylation GTPase-like protei... 121 9e-28
Os07g0563800 Arf GTPase activating protein family protein 100 3e-21
Os02g0198300 Arf GTPase activating protein family protein 92 7e-19
Os01g0951100 Arf GTPase activating protein family protein 91 2e-18
Os05g0382000 Similar to ABL164Cp 81 2e-15
Os09g0510700 Similar to GCN4-complementing protein homolog 78 1e-14
Os02g0632500 Arf GTPase activating protein family protein 74 2e-13
Os08g0537600 Arf GTPase activating protein family protein 73 4e-13
Os02g0722500 Arf GTPase activating protein family protein 68 1e-11
Os06g0609450 Arf GTPase activating protein family protein 68 1e-11
>Os03g0854100 Similar to ARF GAP-like zinc finger-containing protein ZIGA2
(Fragment)
Length = 412
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/412 (87%), Positives = 362/412 (87%)
Query: 1 MAFDAFTDKNAVFRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHIT 60
MAFDAFTDKNAVFRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHIT
Sbjct: 1 MAFDAFTDKNAVFRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHIT 60
Query: 61 FVRSTNLDSWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVDAKYTSRAAELYRQILQKE 120
FVRSTNLDSWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVDAKYTSRAAELYRQILQKE
Sbjct: 61 FVRSTNLDSWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVDAKYTSRAAELYRQILQKE 120
Query: 121 VAKSSADNVLPSSPVAASQPQNPSDDFPEFKLPEAPAENTNGKQEPDVTNSQKAPTQTPK 180
VAKSSADNVLPSSPVAASQPQNPSDDFPEFKLPEAPAENTNGKQEPDVTNSQKAPTQTPK
Sbjct: 121 VAKSSADNVLPSSPVAASQPQNPSDDFPEFKLPEAPAENTNGKQEPDVTNSQKAPTQTPK 180
Query: 181 APTHPTFATXXXXXXXXXXXXXXXXXXXXXXXXXXPSESLYDQKPEEPKPAAPVMTTSTT 240
APTHPTFAT PSESLYDQKPEEPKPAAPVMTTSTT
Sbjct: 181 APTHPTFATSVKKSIGAKKIGGKTGGLGVKKLTTKPSESLYDQKPEEPKPAAPVMTTSTT 240
Query: 241 KSGPSLHSRFEYVENEPAVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQXXXXXXXXX 300
KSGPSLHSRFEYVENEPAVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQ
Sbjct: 241 KSGPSLHSRFEYVENEPAVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQKKTSTAATK 300
Query: 301 XQIQETDEARKKFSNAKAISSSQFFGNQSREEKDAQMSLQKFAGSSSISSADLFGRRXXX 360
QIQETDEARKKFSNAKAISSSQFFGNQSREEKDAQMSLQKFAGSSSISSADLFGRR
Sbjct: 301 TQIQETDEARKKFSNAKAISSSQFFGNQSREEKDAQMSLQKFAGSSSISSADLFGRRDMD 360
Query: 361 XXXXXXXXXXXINRISFQASQDLSSLKNMAGETGKKLTSIASNFISDLDRIL 412
INRISFQASQDLSSLKNMAGETGKKLTSIASNFISDLDRIL
Sbjct: 361 DSNLDLSAADLINRISFQASQDLSSLKNMAGETGKKLTSIASNFISDLDRIL 412
>Os10g0574800 Similar to ARF GAP-like zinc finger-containing protein ZIGA2
(Fragment)
Length = 407
Score = 484 bits (1245), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/408 (60%), Positives = 294/408 (72%), Gaps = 17/408 (4%)
Query: 9 KNAVFRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLD 68
KN VFR+L+AK +NKMCFDC+AKNPTWASVTYG+FLC+DCSAVHRSLGVH++FVRSTNLD
Sbjct: 13 KNTVFRKLRAKSDNKMCFDCNAKNPTWASVTYGVFLCIDCSAVHRSLGVHVSFVRSTNLD 72
Query: 69 SWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVDAKYTSRAAELYRQILQKEVAKSS--- 125
SWTP+QLKMM +GGNNRA AFFKQHGWTDGGK++AKYTSRAA+LYRQ+L K+VAK+S
Sbjct: 73 SWTPEQLKMMVYGGNNRAQAFFKQHGWTDGGKIEAKYTSRAADLYRQLLAKDVAKNSTED 132
Query: 126 ADNVLPSSPVAASQPQNPSDDFPEFKLPEAPAENTNGKQEPDVTNSQKAPTQTPKAPTHP 185
+N PSSPVAASQP N +D P+ KL EA E N K EP+V S +APT + K P
Sbjct: 133 GNNSWPSSPVAASQPTNQADAIPDLKLAEASKEVANEKTEPEVIRSPRAPTHSFKKPI-- 190
Query: 186 TFATXXXXXXXXXXXXXXXXXXXXXXXXXXPSESLYDQKPEEPKPAAPVMTTSTTKSGPS 245
P+ESLY+QKPEE PA P +T ++T S
Sbjct: 191 ----------VAKKPGNKTGGLGARKLTSKPNESLYEQKPEELAPALPPVTENSTAKSKS 240
Query: 246 LHSRFEYVENEPAVDSRNGGTQMTGHVAPPKSSNFFQEYGMDNGFQXXXXXXXXXXQIQE 305
SRFEYVEN P+ S + Q+ GHVAPPKSSNFF E+GMD+G+ QI+E
Sbjct: 241 HTSRFEYVENTPSAGSNSEENQVIGHVAPPKSSNFFGEFGMDSGYHKKSAPGPSKVQIEE 300
Query: 306 TDEARKKFSNAKAISSSQFFGNQSREEKDAQMSLQKFAGSSSISSADLFGRRXXXXXXXX 365
+ EAR+KFSNAK+ISSSQFFG+Q+ EK+AQ+SLQKF+GSS+ISSADLFG
Sbjct: 301 SSEARQKFSNAKSISSSQFFGDQASFEKEAQVSLQKFSGSSAISSADLFG-HPTNSSNVD 359
Query: 366 XXXXXXINRISFQASQDLSSLKNMAGETGKKLTSIASNFISDL-DRIL 412
INR+SFQASQDLSS+KNMAGETGKKLTS+ASN +SDL DRIL
Sbjct: 360 LSASDLINRLSFQASQDLSSIKNMAGETGKKLTSLASNIMSDLQDRIL 407
>Os03g0278400 Similar to ADP ribosylation GTPase-like protein (Fragment)
Length = 453
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 67/105 (63%)
Query: 13 FRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWTP 72
R L+ + NK C DC+ +NP WASV+YG+F+CL+CS HR LGVHI+FVRS +DSWT
Sbjct: 9 LRELQGQAGNKTCVDCAQRNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWTE 68
Query: 73 DQLKMMAFGGNNRAHAFFKQHGWTDGGKVDAKYTSRAAELYRQIL 117
QL+ M GGN+R +AF G AKY S AA YR +
Sbjct: 69 AQLRKMEAGGNDRLNAFLAARGVPKETPHVAKYNSNAAAAYRDRI 113
>Os07g0563800 Arf GTPase activating protein family protein
Length = 476
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 55/80 (68%)
Query: 12 VFRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWT 71
+ L PEN+ C DC +K P WASV GIF+C+ CS +HRSLGVHI+ VRS LD+W
Sbjct: 18 ILEGLLRLPENRECADCKSKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWL 77
Query: 72 PDQLKMMAFGGNNRAHAFFK 91
P+Q+ + GN +++++++
Sbjct: 78 PEQVAFIQSMGNEKSNSYWE 97
>Os02g0198300 Arf GTPase activating protein family protein
Length = 320
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
Query: 9 KNAVFRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLD 68
K A + L + EN++C DCSA +P WAS G+F+CL CS VHRSLG HI+ V S LD
Sbjct: 10 KMAKLKELLHRSENRICADCSAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSVTLD 69
Query: 69 SWTPDQL-KMMAFGGNNRAHAFFK 91
W+ +++ ++ GGN+ A+A ++
Sbjct: 70 QWSDNEIDNVIEVGGNSHANAIYE 93
>Os01g0951100 Arf GTPase activating protein family protein
Length = 381
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 49/74 (66%)
Query: 13 FRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWTP 72
L +P NK+C DC A +P W S+T+G+F+C+ CS HRSLGVHI+ V S LD WT
Sbjct: 53 LEHLLNQPANKICADCGAPDPKWVSLTFGVFICIKCSGAHRSLGVHISKVVSVKLDEWTD 112
Query: 73 DQLKMMAFGGNNRA 86
+Q+ ++A G N A
Sbjct: 113 EQVDILADSGGNAA 126
>Os05g0382000 Similar to ABL164Cp
Length = 395
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 13 FRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWTP 72
L +P NK C DC +P WA++ +G +C+ CS HRSLGVHI+ V S NLD WT
Sbjct: 63 LEHLLKQPANKFCADCGTPDPKWAALPFGALICIKCSGTHRSLGVHISKVISVNLDEWTD 122
Query: 73 DQLKMMAFGGNN 84
+++ +A G N
Sbjct: 123 EEVNCLAGSGGN 134
>Os09g0510700 Similar to GCN4-complementing protein homolog
Length = 836
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 16 LKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLD--SWTPD 73
L+ N +C DC A P WAS+ GI LC++CS VHR+LGVHI+ VRS LD W P
Sbjct: 506 LRKVVGNNICADCGAAEPDWASLNLGILLCIECSGVHRNLGVHISKVRSLTLDVRVWEPS 565
Query: 74 QLKMMAFGGNNRAHAFFK 91
+ + GN A+ ++
Sbjct: 566 VINLFQSLGNTFANTIWE 583
>Os02g0632500 Arf GTPase activating protein family protein
Length = 760
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 12 VFRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLD--S 69
+F L+ P N C +C + +P WAS+ GI +C++CS HR+LGVHI+ VRS LD
Sbjct: 466 IFNHLRNIPGNDSCAECRSPDPDWASLNLGILICIECSGAHRNLGVHISKVRSLRLDVKV 525
Query: 70 WTPDQLKMMAFGGNNRAHAFFK 91
W P + + GN+ ++ ++
Sbjct: 526 WEPVIMDLFHELGNDYTNSIWE 547
>Os08g0537600 Arf GTPase activating protein family protein
Length = 831
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 16 LKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLD--SWTPD 73
L+ N +C DC + P WAS+ G LC++CS VHR+LGVHI+ VRS LD W P
Sbjct: 504 LRKVDGNIICVDCGSMEPDWASLNLGALLCIECSGVHRNLGVHISKVRSLTLDVRVWEPS 563
Query: 74 QLKMMAFGGN 83
+ + GN
Sbjct: 564 VINLFQSLGN 573
>Os02g0722500 Arf GTPase activating protein family protein
Length = 332
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 13 FRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNL-DSWT 71
+ L K +N++C DC A +P WAS G+FLCL C VHR+LG ++ V S L D
Sbjct: 23 LKDLMLKSDNRICADCGAPDPKWASANIGVFLCLKCGDVHRALGPDVSKVLSVTLDDWSD 82
Query: 72 PDQLKMMAFGGNNRAHAFFK 91
D M+ GGN+ A++ ++
Sbjct: 83 SDIDSMLEIGGNSYANSIYE 102
>Os06g0609450 Arf GTPase activating protein family protein
Length = 79
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 8 DKNAVFRRLKAKPENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFV 62
DK + L K EN++C DCS+ +P WAS G+F+CL CS +HRSLG HI+ V
Sbjct: 6 DKMRKLKELLHKSENRICADCSSPDPKWASANIGVFICLKCSGIHRSLGTHISKV 60
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.126 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,776,371
Number of extensions: 504280
Number of successful extensions: 1597
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 1595
Number of HSP's successfully gapped: 12
Length of query: 412
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 309
Effective length of database: 11,657,759
Effective search space: 3602247531
Effective search space used: 3602247531
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)