Os02g0198300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Arf GTPase activating protein family protein.
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Os02g0198300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Arf GTPase activating protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.7 | 0.318 | 11 | -2.97 | 0.391 | 0.903 | 0.0399 | -2.82 | -0.443 | 1.07 | 25.79 | 1317 | -- | -- |
| 49.53 | 0.328 | 10.9 | -2.27 | 0.436 | 0.613 | -0.0634 | -- | -0.298 | 0.914 | 25.78 | 5731 | -- | -- |
| 45.66 | 0.315 | 11 | -2.96 | 0.379 | 0.913 | -- | -2.8 | -0.438 | 1.07 | 25.81 | 1288 | -- | -- |
| 48.01 | 0.323 | 11 | -2.27 | 0.473 | 0.64 | -- | -- | -0.406 | 1.41 | 25.99 | 7695 | -- | -- |
| 52.82 | 0.338 | 11 | -2.8 | -- | 1.02 | -- | -2.36 | -0.417 | -- | 25.3 | 1148 | -- | -- |
| 63.61 | 0.374 | 10.9 | -2.03 | 0.482 | -- | 0.081 | -- | -0.225 | 1.17 | -- | -- | -- | -- |
| 63.64 | 0.374 | 10.9 | -2.04 | 0.481 | -- | -- | -- | -0.225 | 1.13 | -- | -- | -- | -- |
| 55.12 | 0.346 | 10.9 | -2.25 | -- | 0.797 | -- | -- | -0.283 | -- | 25.4 | 1135 | -- | -- |
| 111.38 | 0.492 | 10.8 | -- | 0.495 | -1.26 | -- | -- | 0.379 | 1.06 | 10.01 | 47520 | -- | -- |
| 78 | 0.413 | 10.9 | -2.02 | -- | -- | -- | -- | -0.215 | -- | -- | -- | -- | -- |
| 172.9 | 0.615 | 10.9 | -- | 0.448 | -- | -- | -- | 0.00182 | 0.951 | -- | -- | -- | -- |
| 126.76 | 0.524 | 10.8 | -- | -- | -1.23 | -- | -- | 0.377 | -- | 4.436 | 47520 | -- | -- |
| 185.38 | 0.636 | 10.9 | -- | -- | -- | -- | -- | 0.00851 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 2 | 44.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 28 | 44.97 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 30 | 44.98 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 57 | 45.49 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 60 | 45.52 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 63 | 45.54 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 5 |
| 68 | 45.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 82 | 45.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 106 | 45.77 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 123 | 45.83 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 146 | 45.91 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 147 | 45.92 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 149 | 45.93 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 161 | 45.96 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 167 | 45.97 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 201 | 46.02 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 224 | 46.07 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 237 | 46.09 | humidity | 90 | 43200 | < th | dose independent | sin | 13 | NA |
| 240 | 46.09 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 250 | 46.11 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 251 | 46.11 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 296 | 46.19 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 298 | 46.19 | wind | 5 | 43200 | > th | dose dependent | sin | 23 | NA |
| 335 | 46.25 | wind | 7 | 43200 | < th | dose independent | sin | 23 | NA |
| 341 | 46.25 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 360 | 46.27 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 400 | 46.32 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 418 | 46.34 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 423 | 46.35 | wind | 7 | 43200 | > th | dose independent | sin | 0 | NA |
| 435 | 46.36 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 462 | 46.39 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 483 | 46.41 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 21 |
| 489 | 46.42 | humidity | 90 | 43200 | < th | dose independent | sin | 8 | NA |
| 588 | 46.51 | humidity | 90 | 43200 | > th | dose independent | sin | 13 | NA |
| 600 | 46.52 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 604 | 46.53 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 743 | 46.69 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 756 | 46.70 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 809 | 46.77 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 906 | 46.89 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 912 | 46.90 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 918 | 46.90 | humidity | 80 | 43200 | > th | dose dependent | rect. | 5 | 23 |
| 919 | 46.90 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 944 | 46.93 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 958 | 46.93 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 22 |
| 985 | 46.96 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 17 |
| 988 | 46.96 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 20 |
| 995 | 46.96 | humidity | 80 | 43200 | > th | dose dependent | rect. | 23 | 23 |