Os09g0510700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GCN4-complementing protein homolog.
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Os09g0510700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GCN4-complementing protein homolog.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.19 | 0.298 | 8.76 | 1.48 | 0.306 | -0.836 | -0.346 | 0.536 | 0.466 | 0.653 | 18.5 | 321 | -- | -- |
| 40.44 | 0.296 | 8.76 | 1.4 | 0.343 | -0.826 | -0.367 | -- | 0.446 | 0.743 | 17.9 | 354 | -- | -- |
| 40.62 | 0.297 | 8.76 | 1.49 | 0.323 | -0.813 | -- | 0.607 | 0.46 | 1.14 | 17.96 | 324 | -- | -- |
| 40.97 | 0.298 | 8.77 | 1.39 | 0.332 | -0.8 | -- | -- | 0.431 | 1.18 | 17.7 | 342 | -- | -- |
| 44.09 | 0.309 | 8.74 | 1.58 | -- | -0.979 | -- | 0.892 | 0.503 | -- | 19.3 | 167 | -- | -- |
| 50.14 | 0.332 | 8.79 | 1.2 | 0.519 | -- | -0.0447 | -- | 0.299 | 3 | -- | -- | -- | -- |
| 50.15 | 0.332 | 8.79 | 1.2 | 0.519 | -- | -- | -- | 0.299 | 3.02 | -- | -- | -- | -- |
| 44.75 | 0.312 | 8.76 | 1.44 | -- | -1 | -- | -- | 0.466 | -- | 18 | 161 | -- | -- |
| 86.07 | 0.432 | 8.83 | -- | 0.429 | -0.358 | -- | -- | 0.164 | 2.64 | 26.7 | 168 | -- | -- |
| 65.58 | 0.378 | 8.79 | 1.22 | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
| 88.09 | 0.439 | 8.82 | -- | 0.543 | -- | -- | -- | 0.165 | 3.03 | -- | -- | -- | -- |
| 93.42 | 0.45 | 8.81 | -- | -- | -0.652 | -- | -- | 0.228 | -- | 24.3 | 129 | -- | -- |
| 104.97 | 0.478 | 8.82 | -- | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.37 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 5 | 38.40 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 11 | 38.59 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 30 | 38.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 160 | 39.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 14 |
| 162 | 39.82 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 180 | 39.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 191 | 39.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 256 | 40.22 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 291 | 40.36 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 316 | 40.42 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 322 | 40.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 351 | 40.50 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 352 | 40.51 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 10 |
| 418 | 40.68 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 461 | 40.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 484 | 40.83 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 497 | 40.87 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 520 | 40.92 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 527 | 40.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 571 | 41.01 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 580 | 41.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 602 | 41.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 624 | 41.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 626 | 41.13 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 6 |
| 652 | 41.17 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 712 | 41.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 848 | 41.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 946 | 41.68 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 957 | 41.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 972 | 41.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |