Os08g0537600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Arf GTPase activating protein family protein.
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Os08g0537600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Arf GTPase activating protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.38 | 0.4 | 7.65 | -0.32 | 0.441 | 1.17 | 0.214 | -2.29 | -0.0565 | 0.147 | 27.1 | 6368 | -- | -- |
| 76.93 | 0.409 | 7.58 | 0.419 | 0.473 | 1.06 | -0.0816 | -- | 0.0645 | 23 | 26.66 | 7106 | -- | -- |
| 72.54 | 0.397 | 7.65 | -0.34 | 0.443 | 1.18 | -- | -2.35 | -0.0635 | 0.0189 | 27.1 | 6369 | -- | -- |
| 75.95 | 0.406 | 7.56 | 0.394 | 0.412 | 1.03 | -- | -- | 0.146 | 23.6 | 26.92 | 6505 | -- | -- |
| 83.7 | 0.426 | 7.64 | -0.252 | -- | 1.25 | -- | -2.06 | -0.0678 | -- | 27.15 | 6578 | -- | -- |
| 114.88 | 0.502 | 7.5 | 0.858 | 0.501 | -- | 0.24 | -- | 0.413 | 23.6 | -- | -- | -- | -- |
| 115.11 | 0.502 | 7.5 | 0.849 | 0.501 | -- | -- | -- | 0.413 | 23.4 | -- | -- | -- | -- |
| 86.18 | 0.432 | 7.55 | 0.381 | -- | 1.12 | -- | -- | 0.124 | -- | 26.8 | 6594 | -- | -- |
| 79.56 | 0.415 | 7.57 | -- | 0.433 | 1.13 | -- | -- | 0.116 | 23.8 | 26.7 | 6388 | -- | -- |
| 130.82 | 0.534 | 7.49 | 0.862 | -- | -- | -- | -- | 0.418 | -- | -- | -- | -- | -- |
| 134.09 | 0.542 | 7.52 | -- | 0.51 | -- | -- | -- | 0.318 | 23.5 | -- | -- | -- | -- |
| 89.53 | 0.441 | 7.57 | -- | -- | 1.25 | -- | -- | 0.0431 | -- | 26.55 | 6593 | -- | -- |
| 150.4 | 0.572 | 7.51 | -- | -- | -- | -- | -- | 0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 2 | 76.79 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 24 | 78.13 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 34 | 78.57 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 37 | 78.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 48 | 78.80 | temperature | 20 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 50 | 78.93 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 51 | 78.93 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 4 |
| 57 | 79.05 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 63 | 79.09 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 66 | 79.10 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 68 | 79.10 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 80 | 79.19 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 106 | 79.37 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 14 |
| 115 | 79.42 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 126 | 79.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 2 | 19 |
| 127 | 79.46 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 154 | 79.56 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 165 | 79.58 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 3 |
| 241 | 79.74 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 248 | 79.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 262 | 79.77 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 314 | 79.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 335 | 79.88 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 388 | 79.96 | temperature | 25 | 14400 | > th | dose dependent | sin | 17 | NA |
| 414 | 79.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 21 |
| 425 | 80.00 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 487 | 80.07 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 516 | 80.10 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 538 | 80.12 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 560 | 80.16 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 566 | 80.17 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 572 | 80.18 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 584 | 80.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 618 | 80.22 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 17 |
| 619 | 80.22 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 17 |
| 653 | 80.27 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 655 | 80.27 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 14 |
| 665 | 80.28 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 672 | 80.29 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 706 | 80.32 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 776 | 80.38 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 792 | 80.39 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 838 | 80.43 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 853 | 80.44 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 855 | 80.44 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 884 | 80.46 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 912 | 80.48 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 955 | 80.51 | temperature | 25 | 14400 | < th | dose independent | sin | 18 | NA |
| 980 | 80.52 | temperature | 20 | 14400 | > th | dose dependent | sin | 13 | NA |
| 990 | 80.53 | temperature | 25 | 14400 | > th | dose independent | sin | 18 | NA |