Os02g0722500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Arf GTPase activating protein family protein.
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Os02g0722500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Arf GTPase activating protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.93 | 0.248 | 10.8 | 0.805 | 0.352 | -0.755 | 0.958 | 1.79 | 0.403 | 2.93 | 20.1 | 257 | -- | -- |
| 30.17 | 0.258 | 10.8 | 0.435 | 0.386 | -0.662 | 0.418 | -- | 0.303 | 4.43 | 20.1 | 257 | -- | -- |
| 30.3 | 0.256 | 10.8 | 0.595 | 0.336 | -0.804 | -- | 0.736 | 0.357 | 3.71 | 19.19 | 205 | -- | -- |
| 30.21 | 0.256 | 10.8 | 0.448 | 0.364 | -0.72 | -- | -- | 0.311 | 4.47 | 19.47 | 64 | -- | -- |
| 34.41 | 0.273 | 10.8 | 0.635 | -- | -1.03 | -- | 0.742 | 0.392 | -- | 21.65 | 118 | -- | -- |
| 36.82 | 0.284 | 10.8 | 0.304 | 0.605 | -- | 0.663 | -- | 0.192 | 3.67 | -- | -- | -- | -- |
| 38.12 | 0.289 | 10.8 | 0.293 | 0.611 | -- | -- | -- | 0.188 | 3.82 | -- | -- | -- | -- |
| 34.79 | 0.275 | 10.8 | 0.526 | -- | -0.997 | -- | -- | 0.363 | -- | 20.26 | 113 | -- | -- |
| 35.18 | 0.276 | 10.8 | -- | 0.405 | -0.566 | -- | -- | 0.24 | 4.24 | 19.97 | 63 | -- | -- |
| 58.68 | 0.358 | 10.8 | 0.318 | -- | -- | -- | -- | 0.204 | -- | -- | -- | -- | -- |
| 40.38 | 0.297 | 10.8 | -- | 0.617 | -- | -- | -- | 0.155 | 3.81 | -- | -- | -- | -- |
| 40.46 | 0.296 | 10.8 | -- | -- | -0.882 | -- | -- | 0.249 | -- | 24.1 | 64 | -- | -- |
| 61.35 | 0.366 | 10.8 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.83 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 3 | 26.01 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 10 |
| 4 | 26.07 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 21 |
| 12 | 26.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 21 | 26.25 | humidity | 80 | 43200 | > th | dose dependent | sin | 3 | NA |
| 24 | 26.27 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 20 |
| 28 | 26.28 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 37 | 26.30 | humidity | 90 | 43200 | < th | dose independent | sin | 4 | NA |
| 42 | 26.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 45 | 26.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 54 | 26.34 | humidity | 90 | 43200 | > th | dose independent | sin | 5 | NA |
| 55 | 26.34 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 62 | 26.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 23 |
| 69 | 26.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 80 | 26.38 | humidity | 90 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 85 | 26.39 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 86 | 26.39 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 87 | 26.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 94 | 26.40 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 19 |
| 96 | 26.40 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 99 | 26.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 101 | 26.40 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 106 | 26.41 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 107 | 26.41 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 118 | 26.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 128 | 26.43 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 138 | 26.45 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 156 | 26.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 172 | 26.48 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 186 | 26.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 189 | 26.50 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 199 | 26.50 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 240 | 26.54 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 260 | 26.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 263 | 26.56 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 273 | 26.56 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 309 | 26.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 323 | 26.60 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 325 | 26.60 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 344 | 26.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 403 | 26.67 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 465 | 26.74 | humidity | 80 | 43200 | > th | dose dependent | sin | 18 | NA |
| 479 | 26.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 490 | 26.77 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 514 | 26.79 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 521 | 26.80 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 536 | 26.82 | radiation | 40 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 551 | 26.83 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 618 | 26.88 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 620 | 26.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 633 | 26.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 638 | 26.91 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 708 | 26.96 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 761 | 27.00 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 798 | 27.03 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 800 | 27.03 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 801 | 27.03 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 824 | 27.04 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 23 |
| 832 | 27.05 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 862 | 27.08 | radiation | 40 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 885 | 27.09 | humidity | 80 | 43200 | > th | dose dependent | no | NA | NA |
| 887 | 27.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 953 | 27.13 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 1 |