Os10g0574800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ARF GAP-like zinc finger-containing protein ZIGA2 (Fragment).
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Os10g0574800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ARF GAP-like zinc finger-containing protein ZIGA2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.81 | 0.161 | 12.1 | 0.11 | 0.226 | -0.138 | -0.642 | -0.15 | -0.0811 | 23.1 | 24.8 | 165 | -- | -- |
| 11.89 | 0.161 | 12.1 | 0.0777 | 0.219 | -0.145 | -0.648 | -- | -0.0973 | 23.1 | 24.7 | 164 | -- | -- |
| 13.38 | 0.17 | 12.1 | 0.179 | 0.244 | -0.136 | -- | -0.303 | -0.061 | 23.2 | 25 | 132 | -- | -- |
| 13.74 | 0.173 | 12.1 | 0.091 | 0.239 | -0.154 | -- | -- | -0.0952 | 23.3 | 25.1 | 132 | -- | -- |
| 16.13 | 0.187 | 12.1 | 0.15 | -- | -0.191 | -- | -0.058 | -0.0409 | -- | 25.1 | 755 | -- | -- |
| 13.32 | 0.171 | 12.1 | 0.107 | 0.215 | -- | -0.674 | -- | -0.0197 | 22.2 | -- | -- | -- | -- |
| 15.04 | 0.182 | 12.1 | 0.136 | 0.225 | -- | -- | -- | -0.017 | 21.5 | -- | -- | -- | -- |
| 15.81 | 0.185 | 12.1 | 0.0574 | -- | -0.227 | -- | -- | -0.0944 | -- | 25.02 | 759 | -- | -- |
| 13.96 | 0.174 | 12.1 | -- | 0.233 | -0.158 | -- | -- | -0.101 | 23.3 | 25.1 | 132 | -- | -- |
| 18.03 | 0.198 | 12.1 | 0.137 | -- | -- | -- | -- | -0.0176 | -- | -- | -- | -- | -- |
| 15.52 | 0.184 | 12.1 | -- | 0.226 | -- | -- | -- | -0.0321 | 21.5 | -- | -- | -- | -- |
| 15.93 | 0.186 | 12.1 | -- | -- | -0.232 | -- | -- | -0.105 | -- | 25.1 | 781 | -- | -- |
| 18.52 | 0.201 | 12.1 | -- | -- | -- | -- | -- | -0.0328 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.84 | temperature | 25 | 90 | > th | dose independent | sin | 6 | NA |
| 2 | 10.87 | temperature | 25 | 90 | < th | dose independent | sin | 6 | NA |
| 4 | 10.89 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 11 |
| 15 | 11.00 | temperature | 25 | 90 | > th | dose independent | rect. | 23 | 16 |
| 23 | 11.07 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 8 |
| 24 | 11.07 | temperature | 25 | 90 | > th | dose independent | rect. | 19 | 21 |
| 25 | 11.07 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 28 | 11.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 12 |
| 33 | 11.10 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 35 | 11.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 39 | 11.11 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 20 |
| 41 | 11.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 46 | 11.13 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 9 |
| 51 | 11.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 55 | 11.14 | temperature | 20 | 10 | > th | dose dependent | sin | 4 | NA |
| 56 | 11.14 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 7 |
| 69 | 11.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 9 |
| 94 | 11.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 14 |
| 101 | 11.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 107 | 11.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 18 |
| 163 | 11.28 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 185 | 11.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 228 | 11.32 | temperature | 25 | 10 | > th | dose dependent | sin | 7 | NA |
| 238 | 11.33 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 10 |
| 251 | 11.34 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 5 |
| 253 | 11.34 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 11 |
| 289 | 11.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 335 | 11.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 360 | 11.40 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 385 | 11.42 | humidity | 90 | 10 | < th | dose independent | rect. | 6 | 10 |
| 436 | 11.44 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 16 |
| 446 | 11.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 4 |
| 453 | 11.45 | radiation | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 503 | 11.48 | radiation | 1 | 270 | > th | dose independent | rect. | 18 | 20 |
| 535 | 11.50 | radiation | 1 | 270 | > th | dose independent | sin | 5 | NA |
| 575 | 11.51 | radiation | 30 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 595 | 11.52 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 19 |
| 615 | 11.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 650 | 11.55 | radiation | 1 | 270 | > th | dose independent | rect. | 5 | 9 |
| 673 | 11.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 736 | 11.57 | radiation | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 768 | 11.58 | radiation | 30 | 30 | < th | dose dependent | rect. | 1 | 18 |
| 780 | 11.59 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 6 |
| 784 | 11.59 | radiation | 1 | 30 | > th | dose independent | rect. | 6 | 10 |
| 877 | 11.62 | humidity | 50 | 30 | > th | dose independent | rect. | 16 | 14 |
| 962 | 11.64 | radiation | 30 | 30 | < th | dose dependent | rect. | 3 | 16 |
| 973 | 11.65 | humidity | 50 | 270 | > th | dose independent | rect. | 5 | 9 |