Os07g0563800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Arf GTPase activating protein family protein.
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Os07g0563800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Arf GTPase activating protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.54 | 0.247 | 12.7 | 0.664 | 1.22 | 0.402 | 0.262 | -0.2 | 0.631 | 2.96 | 71.69 | 1294 | -- | -- |
| 27.62 | 0.245 | 12.7 | 0.631 | 1.22 | 0.393 | 0.286 | -- | 0.621 | 2.96 | 71.19 | 1299 | -- | -- |
| 27.76 | 0.245 | 12.7 | 0.664 | 1.22 | 0.396 | -- | -0.245 | 0.631 | 2.97 | 71.88 | 1291 | -- | -- |
| 27.9 | 0.246 | 12.7 | 0.624 | 1.22 | 0.39 | -- | -- | 0.617 | 2.97 | 71 | 1296 | -- | -- |
| 54.58 | 0.346 | 12.7 | 0.666 | -- | 0.721 | -- | 0.0669 | 0.598 | -- | 75 | 1767 | -- | -- |
| 33.12 | 0.27 | 12.7 | 0.551 | 1.16 | -- | 0.201 | -- | 0.561 | 3.03 | -- | -- | -- | -- |
| 33.25 | 0.27 | 12.7 | 0.546 | 1.16 | -- | -- | -- | 0.559 | 3.04 | -- | -- | -- | -- |
| 53.89 | 0.343 | 12.7 | 0.658 | -- | 0.711 | -- | -- | 0.563 | -- | 79 | 3316 | -- | -- |
| 36.33 | 0.281 | 12.7 | -- | 1.15 | 0.422 | -- | -- | 0.594 | 3.14 | 72.85 | 7473 | -- | -- |
| 110.1 | 0.49 | 12.7 | 0.596 | -- | -- | -- | -- | 0.589 | -- | -- | -- | -- | -- |
| 41.12 | 0.3 | 12.7 | -- | 1.17 | -- | -- | -- | 0.498 | 3.05 | -- | -- | -- | -- |
| 65.29 | 0.378 | 12.7 | -- | -- | 0.697 | -- | -- | 0.491 | -- | 79 | 3316 | -- | -- |
| 119.46 | 0.51 | 12.7 | -- | -- | -- | -- | -- | 0.523 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 2 | 24.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 5 | 24.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 16 | 24.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 29 | 25.12 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 31 | 25.13 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 14 |
| 103 | 25.59 | radiation | 1 | 720 | < th | dose dependent | sin | 9 | NA |
| 110 | 25.62 | radiation | 1 | 720 | < th | dose dependent | sin | 6 | NA |
| 116 | 25.64 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 15 |
| 138 | 25.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 172 | 25.87 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 173 | 25.88 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 15 |
| 192 | 25.98 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 21 |
| 199 | 25.99 | radiation | 1 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 211 | 26.05 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 219 | 26.07 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 258 | 26.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 307 | 26.30 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 313 | 26.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 414 | 26.55 | radiation | 1 | 720 | < th | dose independent | rect. | 18 | 19 |
| 420 | 26.56 | radiation | 1 | 720 | < th | dose independent | rect. | 18 | 21 |
| 432 | 26.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 461 | 26.63 | temperature | 25 | 10 | > th | dose independent | rect. | 5 | 15 |
| 479 | 26.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 496 | 26.69 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 13 |
| 529 | 26.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 539 | 26.78 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 4 |
| 540 | 26.78 | humidity | 70 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 568 | 26.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 613 | 26.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 616 | 26.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 622 | 26.90 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 21 |
| 631 | 26.91 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 704 | 27.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 717 | 27.02 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 8 |
| 734 | 27.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 736 | 27.04 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 4 |
| 742 | 27.05 | radiation | 1 | 720 | < th | dose independent | sin | 10 | NA |
| 747 | 27.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 772 | 27.09 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 10 |
| 820 | 27.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 821 | 27.12 | radiation | 1 | 720 | > th | dose independent | sin | 4 | NA |
| 822 | 27.12 | radiation | 1 | 720 | < th | dose independent | sin | 5 | NA |
| 828 | 27.13 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 852 | 27.14 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 853 | 27.14 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 19 |
| 859 | 27.15 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 23 |
| 870 | 27.17 | radiation | 1 | 720 | > th | dose independent | sin | 10 | NA |
| 918 | 27.21 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 921 | 27.21 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 977 | 27.24 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 991 | 27.26 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 992 | 27.26 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 23 |
| 1000 | 27.27 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 21 |