BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0804600 Os03g0804600|Os03g0804600
(89 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0804600 Cupin 1 domain containing protein 182 4e-47
Os03g0804700 Similar to Germin-like protein subfamily T mem... 109 5e-25
Os03g0804500 Similar to Germin-like protein subfamily T mem... 94 3e-20
Os05g0277500 Similar to Germin-like protein subfamily 2 mem... 69 9e-13
Os01g0249200 Similar to Nectarin 1 precursor (EC 1.15.1.1) ... 68 1e-12
Os03g0693700 Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Ger... 67 2e-12
Os03g0693800 Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Ger... 67 3e-12
Os03g0694000 Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Ger... 67 3e-12
Os03g0693900 Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Ger... 67 3e-12
Os03g0651800 Similar to Germin-like protein subfamily 2 mem... 62 6e-11
>Os03g0804600 Cupin 1 domain containing protein
Length = 89
Score = 182 bits (463), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK 60
MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK
Sbjct: 1 MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK 60
Query: 61 SKGRIPITGGEPSMAPPRPRHGGGRWEDA 89
SKGRIPITGGEPSMAPPRPRHGGGRWEDA
Sbjct: 61 SKGRIPITGGEPSMAPPRPRHGGGRWEDA 89
>Os03g0804700 Similar to Germin-like protein subfamily T member 1 precursor
Length = 231
Score = 109 bits (272), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/62 (83%), Positives = 58/62 (93%)
Query: 1 MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK 60
MIHFQYNVG VAAQVITAFNSQ+PGVVAA +LFGSDPEIPDAVLA+++QVD KII+LLK
Sbjct: 169 MIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIKLLK 228
Query: 61 SK 62
SK
Sbjct: 229 SK 230
>Os03g0804500 Similar to Germin-like protein subfamily T member 1 precursor
Length = 233
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 55/62 (88%)
Query: 1 MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK 60
++HFQYN G+ +A+ +T FNSQLPGVV AA +LFG+DPEIPDAVLA+++QVD +II+LLK
Sbjct: 169 LMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEIIKLLK 228
Query: 61 SK 62
SK
Sbjct: 229 SK 230
>Os05g0277500 Similar to Germin-like protein subfamily 2 member 4 precursor
Length = 221
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%)
Query: 1 MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK 60
++HFQ N GD A VI+AFNSQLPG + A +LF + PE+PD VL + +QV K + +K
Sbjct: 154 LLHFQKNNGDTPAAVISAFNSQLPGTQSLAMTLFAASPEVPDGVLTKAFQVGTKEVEKIK 213
Query: 61 SK 62
S+
Sbjct: 214 SR 215
>Os01g0249200 Similar to Nectarin 1 precursor (EC 1.15.1.1) (Superoxide dismutase
[Mn])
Length = 227
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 45/62 (72%)
Query: 1 MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK 60
++HFQ N GD A V++AFNSQLPG + A +LF + P +PDAVLA+ +Q+D + + +K
Sbjct: 160 LVHFQRNTGDKPAAVVSAFNSQLPGTQSIAATLFAASPAVPDAVLAKAFQIDDEEVDKIK 219
Query: 61 SK 62
+K
Sbjct: 220 AK 221
>Os03g0693700 Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin)
Length = 227
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 1 MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK 60
++HFQ+NVG A ++ +FNSQ PG+V +LFGS+P IP VL + +VD ++ LLK
Sbjct: 161 LMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLK 220
Query: 61 SKGRIPITGG 70
SK TGG
Sbjct: 221 SK----FTGG 226
>Os03g0693800 Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin)
Length = 229
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 1 MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK 60
++HFQ+NVG A ++ +FNSQ PG+V +LFGS+P IP VL + +VD ++ LLK
Sbjct: 163 LMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDTGVVELLK 222
Query: 61 SKGRIPITGG 70
SK TGG
Sbjct: 223 SK----FTGG 228
>Os03g0694000 Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin)
Length = 229
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 1 MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK 60
++HFQ+NVG A ++ +FNSQ PG+V +LFGS+P IP VL + +VD ++ LLK
Sbjct: 163 LMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLK 222
Query: 61 SKGRIPITGG 70
SK TGG
Sbjct: 223 SK----FTGG 228
>Os03g0693900 Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin)
Length = 227
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 1 MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK 60
++HFQ+NVG A ++ +FNSQ PG+V +LFGS+P IP VL + +VD ++ LLK
Sbjct: 161 LMHFQFNVGKTEATMVVSFNSQNPGIVFVPLTLFGSNPPIPTPVLVKALRVDAGVVELLK 220
Query: 61 SKGRIPITGG 70
SK TGG
Sbjct: 221 SK----FTGG 226
>Os03g0651800 Similar to Germin-like protein subfamily 2 member 1 precursor
Length = 222
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 1 MIHFQYNVGDVAAQVITAFNSQLPGVVAAAPSLFGSDPEIPDAVLAENYQVDVKIIRLLK 60
++HFQ N G+ +A I AFNSQLPG + A +LFG+ P +P LA +QVD ++ +K
Sbjct: 156 LVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAFQVDGGMVESIK 215
Query: 61 SK 62
SK
Sbjct: 216 SK 217
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,879,608
Number of extensions: 150499
Number of successful extensions: 580
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 10
Length of query: 89
Length of database: 17,035,801
Length adjustment: 59
Effective length of query: 30
Effective length of database: 13,955,175
Effective search space: 418655250
Effective search space used: 418655250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)