Os03g0804500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Germin-like protein subfamily T member 1 precursor.
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Os03g0804500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Germin-like protein subfamily T member 1 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 192.69 | 0.652 | 11.1 | -0.392 | 2.06 | -1.24 | 0.879 | -3.05 | -0.224 | 0.639 | 23.67 | 5990 | -- | -- |
| 196.65 | 0.653 | 11.1 | 0.321 | 2.05 | -1.29 | 1.13 | -- | -0.161 | 0.533 | 26.01 | 5953 | -- | -- |
| 195.42 | 0.656 | 11.1 | -0.236 | 1.4 | -1.87 | -- | -3.56 | -0.114 | 23.3 | 23.6 | 6003 | -- | -- |
| 198.87 | 0.657 | 11.1 | 0.42 | 2.03 | -1.42 | -- | -- | -0.087 | 0.606 | 25.75 | 5948 | -- | -- |
| 296.55 | 0.806 | 11 | 0.138 | -- | -2.87 | -- | -2.16 | 0.0702 | -- | 23.6 | 6003 | -- | -- |
| 276.29 | 0.779 | 11.1 | -0.0838 | 2.01 | -- | 0.752 | -- | -0.246 | 0.619 | -- | -- | -- | -- |
| 278.7 | 0.782 | 11.1 | -0.112 | 2 | -- | -- | -- | -0.249 | 0.601 | -- | -- | -- | -- |
| 299.5 | 0.81 | 11 | 0.438 | -- | -3.03 | -- | -- | 0.16 | -- | 23.6 | 6003 | -- | -- |
| 202.95 | 0.664 | 11.1 | -- | 2.03 | -1.3 | -- | -- | -0.157 | 0.624 | 26.23 | 5946 | -- | -- |
| 530.2 | 1.08 | 11.1 | -0.0414 | -- | -- | -- | -- | -0.215 | -- | -- | -- | -- | -- |
| 279.03 | 0.781 | 11.1 | -- | 2 | -- | -- | -- | -0.237 | 0.598 | -- | -- | -- | -- |
| 304.44 | 0.815 | 11 | -- | -- | -2.95 | -- | -- | 0.104 | -- | 23.6 | 6003 | -- | -- |
| 530.24 | 1.07 | 11.1 | -- | -- | -- | -- | -- | -0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 192.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 2 | 192.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 3 | 193.08 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 4 | 193.20 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 20 |
| 5 | 193.46 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 10 | 193.74 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 12 | 193.78 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 13 | 193.86 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 25 | 194.37 | temperature | 20 | 14400 | > th | dose independent | rect. | 13 | 16 |
| 40 | 194.57 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 53 | 194.67 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 57 | 194.70 | temperature | 20 | 14400 | > th | dose independent | sin | 12 | NA |
| 64 | 194.78 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 69 | 194.82 | temperature | 20 | 14400 | < th | dose independent | rect. | 13 | 16 |
| 101 | 195.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 14 |
| 112 | 195.17 | temperature | 20 | 14400 | < th | dose independent | sin | 12 | NA |
| 166 | 195.53 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 8 |
| 207 | 195.81 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 210 | 195.81 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 211 | 195.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 227 | 195.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 22 |
| 233 | 195.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 22 |
| 241 | 195.95 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 245 | 195.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 299 | 196.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 313 | 196.19 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 315 | 196.19 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 327 | 196.23 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 20 |
| 333 | 196.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 344 | 196.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 405 | 196.37 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 455 | 196.47 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 456 | 196.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 16 |
| 483 | 196.55 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 539 | 196.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 541 | 196.74 | temperature | 20 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 573 | 196.87 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 599 | 196.97 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 622 | 197.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 624 | 197.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 626 | 197.03 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 631 | 197.05 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 684 | 197.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 700 | 197.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 712 | 197.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 729 | 197.50 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 730 | 197.50 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 743 | 197.55 | temperature | 20 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 766 | 197.64 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 797 | 197.76 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 836 | 198.04 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 843 | 198.10 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 866 | 198.23 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 867 | 198.24 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 881 | 198.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 944 | 198.65 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 961 | 198.78 | temperature | 20 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 983 | 198.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 991 | 198.95 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 2 |