Os03g0804600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupin 1 domain containing protein.
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Os03g0804600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupin 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 196.97 | 0.659 | 6 | 2.27 | 1.3 | -1.94 | 0.802 | 3.73 | 0.187 | 1.07 | 25.96 | 5846 | -- | -- |
| 200.37 | 0.659 | 6.06 | 1.39 | 1.38 | -1.57 | 0.857 | -- | 0.292 | 1.18 | 23.2 | 7176 | -- | -- |
| 199.33 | 0.658 | 6.01 | 2.24 | 1.32 | -1.93 | -- | 3.91 | 0.137 | 1.09 | 26.38 | 5800 | -- | -- |
| 202.65 | 0.663 | 6.06 | 1.33 | 1.36 | -1.55 | -- | -- | 0.271 | 1.06 | 23.15 | 7213 | -- | -- |
| 294.72 | 0.804 | 6.12 | 1.09 | -- | -2.41 | -- | 1.65 | -0.126 | -- | 26.38 | 5800 | -- | -- |
| 300.45 | 0.813 | 6.17 | 0.639 | 1.28 | -- | 0.544 | -- | -0.226 | 0.961 | -- | -- | -- | -- |
| 301.69 | 0.813 | 6.17 | 0.62 | 1.28 | -- | -- | -- | -0.229 | 0.939 | -- | -- | -- | -- |
| 253.13 | 0.744 | 6.08 | 1.08 | -- | -2.44 | -- | -- | 0.125 | -- | 23.15 | 7213 | -- | -- |
| 236.78 | 0.717 | 6.14 | -- | 1.4 | -1.18 | -- | -- | -0.096 | 1.17 | 27.8 | 7142 | -- | -- |
| 403.31 | 0.938 | 6.15 | 0.667 | -- | -- | -- | -- | -0.204 | -- | -- | -- | -- | -- |
| 311.81 | 0.826 | 6.19 | -- | 1.29 | -- | -- | -- | -0.298 | 0.96 | -- | -- | -- | -- |
| 282.91 | 0.786 | 6.11 | -- | -- | -2.26 | -- | -- | -0.0165 | -- | 23.15 | 7213 | -- | -- |
| 415.05 | 0.951 | 6.17 | -- | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.96 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 2 | 192.45 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 3 | 198.80 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 4 | 198.95 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 5 | 199.10 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 9 | 199.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 16 |
| 15 | 200.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 16 | 200.63 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 17 | 200.84 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 18 | 200.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 19 | 201.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 20 | 201.53 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 26 | 201.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 30 | 201.96 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 16 |
| 34 | 202.03 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 46 | 202.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 47 | 202.32 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 54 | 202.42 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 62 | 202.47 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 65 | 202.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 14 |
| 69 | 202.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 75 | 202.52 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 23 |
| 76 | 202.53 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 84 | 202.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 3 | 23 |
| 86 | 202.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 94 | 202.57 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 116 | 202.64 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 140 | 202.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 141 | 202.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 9 |
| 143 | 202.73 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 145 | 202.75 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 151 | 202.75 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 155 | 202.75 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 159 | 202.75 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 164 | 202.76 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 172 | 202.77 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 184 | 202.80 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 216 | 202.89 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 267 | 203.09 | wind | 7 | 43200 | > th | dose dependent | sin | 16 | NA |
| 293 | 203.23 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 294 | 203.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 5 |
| 313 | 203.36 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 375 | 203.51 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 390 | 203.60 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 424 | 203.72 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 454 | 203.73 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 12 |
| 471 | 203.79 | temperature | 30 | 14400 | < th | dose independent | sin | 15 | NA |
| 491 | 203.87 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 16 |
| 499 | 203.90 | temperature | 30 | 14400 | > th | dose independent | sin | 15 | NA |
| 500 | 203.90 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 13 |
| 503 | 203.92 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 584 | 204.20 | temperature | 20 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 603 | 204.28 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 605 | 204.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 6 |
| 637 | 204.42 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 669 | 204.58 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 672 | 204.58 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 674 | 204.59 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 4 |
| 705 | 204.72 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 7 |
| 722 | 204.77 | wind | 7 | 43200 | > th | dose independent | sin | 17 | NA |
| 728 | 204.79 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 784 | 204.96 | wind | 9 | 43200 | < th | dose independent | sin | 16 | NA |
| 822 | 205.04 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 15 |
| 823 | 205.04 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 20 |
| 835 | 205.05 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 18 |
| 847 | 205.08 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 3 |
| 904 | 205.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 935 | 205.30 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 958 | 205.37 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 22 |