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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0693900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.011) R2 : 0.00136
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0182 (0.0231) R2dN8 : 0.00176 R2N8 : 0.00136
σ : 0.207
deviance : 19.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.96 0.203 2.98 -0.146 0.0601 -0.527 0.192 2.58 0.028 11.3 1000 10 -- --
19.06 0.205 2.95 0.0263 0.0571 -0.0712 0.184 -- 0.0278 11.2 1000 10 -- --
19.12 0.205 2.97 -0.126 0.0589 -0.494 -- 2.38 0.0288 11.2 1000 10 -- --
19.2 0.205 2.95 0.0334 0.0562 -0.0729 -- -- 0.0286 11.2 1000 10 -- --
19.34 0.206 2.97 -0.108 -- -0.444 -- 2.09 0.0284 -- 1000 10 -- --
19.2 0.205 2.95 0.0389 0.0584 -- 0.187 -- 0.0231 11.3 -- -- -- --
19.35 0.206 2.95 0.0465 0.0575 -- -- -- 0.0238 11.3 -- -- -- --
19.4 0.206 2.95 0.0316 -- -0.0753 -- -- 0.0283 -- 1000 10 -- --
19.23 0.205 2.95 -- 0.0558 -0.0785 -- -- 0.0254 11.1 1000 10 -- --
19.55 0.207 2.95 0.0451 -- -- -- -- 0.0232 -- -- -- -- --
19.4 0.206 2.95 -- 0.0571 -- -- -- 0.0186 11.2 -- -- -- --
19.42 0.206 2.95 -- -- -0.0806 -- -- 0.0252 -- 1000 10 -- --
19.61 0.207 2.95 -- -- -- -- -- 0.0182 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.98 temperature 25.0 30 < th dose independent rect. 2 1
2 17.98 atmosphere 1005.0 10 > th dose dependent rect. 2 1
3 17.99 temperature 30.0 30 < th dose dependent rect. 2 1
5 18.00 wind 3.0 30 < th dose independent rect. 2 1
9 18.00 temperature 10.0 30 > th dose independent rect. 2 1
12 18.00 humidity 50.0 30 > th dose independent rect. 2 1
15 18.00 atmosphere 995.0 30 > th dose independent rect. 2 1
16 18.00 atmosphere 1010.0 30 < th dose independent rect. 2 1
18 18.00 radiation 1.0 30 < th dose independent rect. 2 1
23 18.00 precipitation 0.1 30 < th dose independent rect. 2 1
24 18.00 temperature 10.0 30 > th dose independent rect. 3 23
25 18.00 wind 5.0 30 < th dose dependent rect. 2 1
28 18.00 atmosphere 1015.0 30 < th dose dependent rect. 2 1
29 18.00 radiation 1.0 30 < th dose dependent rect. 2 1
34 18.00 precipitation 0.1 30 < th dose dependent rect. 2 1
36 18.01 temperature 10.0 30 > th dose dependent rect. 2 1
37 18.01 atmosphere 995.0 30 > th dose dependent rect. 2 1
40 18.02 humidity 50.0 30 > th dose dependent rect. 2 1
52 18.06 wind 1.0 30 > th dose independent rect. 2 1
92 18.14 temperature 30.0 30 < th dose independent rect. 16 1
93 18.14 humidity 50.0 30 > th dose independent rect. 16 1
98 18.17 atmosphere 1005.0 30 > th dose independent rect. 16 1
99 18.17 atmosphere 1005.0 30 > th dose dependent rect. 16 1
102 18.18 humidity 50.0 30 > th dose dependent rect. 16 1
104 18.20 wind 9.0 10 < th dose independent rect. 3 23
106 18.20 wind 5.0 30 > th dose dependent rect. 16 1
108 18.22 wind 7.0 30 > th dose independent rect. 16 1
119 18.26 radiation 10.0 10 < th dose independent rect. 16 1
124 18.34 temperature 30.0 30 < th dose dependent rect. 16 1
129 18.36 radiation 20.0 30 < th dose dependent rect. 16 1
131 18.39 temperature 10.0 1440 > th dose independent rect. 21 1
134 18.39 temperature 30.0 1440 < th dose independent rect. 21 1
138 18.39 humidity 50.0 1440 > th dose independent rect. 21 1
144 18.39 atmosphere 995.0 1440 > th dose independent rect. 21 1
145 18.39 radiation 1.0 1440 < th dose independent rect. 21 1
165 18.39 temperature 10.0 1440 > th dose independent rect. 22 23
169 18.39 radiation 10.0 1440 < th dose dependent rect. 21 1
174 18.41 temperature 25.0 30 > th dose independent rect. 20 1
175 18.41 humidity 80.0 30 > th dose independent rect. 20 1
177 18.41 atmosphere 1000.0 30 > th dose dependent rect. 20 1
179 18.42 wind 3.0 30 > th dose independent rect. 20 1
180 18.42 atmosphere 1005.0 30 > th dose independent rect. 20 1
183 18.43 wind 5.0 30 < th dose independent rect. 20 1
187 18.43 wind 1.0 30 > th dose dependent rect. 20 1
188 18.43 temperature 10.0 30 > th dose dependent rect. 20 1
191 18.43 humidity 50.0 30 > th dose dependent rect. 20 1
197 18.44 temperature 10.0 30 > th dose independent rect. 20 1
200 18.44 temperature 30.0 30 < th dose independent rect. 20 1
201 18.44 humidity 50.0 30 > th dose independent rect. 20 1
204 18.44 humidity 90.0 30 < th dose independent rect. 20 1
206 18.44 atmosphere 1010.0 30 < th dose independent rect. 20 1
208 18.44 radiation 1.0 30 < th dose independent rect. 20 1
213 18.44 precipitation 0.1 30 < th dose independent rect. 20 1
214 18.44 temperature 10.0 30 > th dose independent rect. 21 23
215 18.44 wind 9.0 30 < th dose dependent rect. 20 1
217 18.44 radiation 1.0 30 < th dose dependent rect. 20 1
222 18.44 radiation 40.0 14400 < th dose dependent rect. 21 1
223 18.44 precipitation 0.1 30 < th dose dependent rect. 20 1
235 18.47 wind 9.0 30 < th dose independent rect. 17 23
243 18.49 temperature 30.0 30 < th dose dependent rect. 20 1
244 18.49 atmosphere 1015.0 30 < th dose dependent rect. 20 1
246 18.50 temperature 20.0 10 > th dose independent rect. 16 1
247 18.50 humidity 90.0 30 < th dose dependent rect. 20 1
249 18.51 humidity 80.0 10 < th dose independent rect. 16 1
250 18.51 atmosphere 995.0 10 > th dose independent rect. 16 1
251 18.51 radiation 1.0 10 > th dose independent rect. 16 1
255 18.52 wind 1.0 10 > th dose independent rect. 16 1
257 18.52 wind 9.0 10 < th dose independent rect. 16 1
259 18.52 wind 9.0 1440 < th dose independent rect. 21 1
260 18.52 temperature 10.0 10 > th dose independent rect. 16 1
270 18.52 atmosphere 1010.0 10 < th dose independent rect. 16 1
274 18.52 radiation 40.0 10 < th dose independent rect. 16 1
276 18.52 precipitation 0.1 10 < th dose independent rect. 16 1
278 18.52 temperature 10.0 10 > th dose independent rect. 17 23
281 18.52 precipitation 0.1 10 < th dose dependent rect. 16 1
289 18.53 temperature 30.0 10 > th dose independent rect. 12 3
295 18.55 radiation 30.0 30 < th dose independent rect. 12 1
306 18.56 wind 7.0 90 < th dose independent rect. 3 8
307 18.56 wind 1.0 90 < th dose dependent rect. 13 1
310 18.57 temperature 10.0 10 > th dose dependent rect. 16 1
312 18.57 temperature 10.0 90 > th dose dependent rect. 3 8
315 18.58 wind 9.0 30 < th dose independent rect. 21 23
319 18.58 radiation 1.0 30 > th dose dependent rect. 16 1
323 18.59 atmosphere 1015.0 90 < th dose independent rect. 11 16
324 18.59 temperature 30.0 10 < th dose independent rect. 17 23
328 18.59 atmosphere 1015.0 30 < th dose dependent rect. 16 1
331 18.60 temperature 30.0 10 > th dose independent rect. 14 1
334 18.60 humidity 80.0 90 < th dose independent rect. 1 2
335 18.60 wind 7.0 90 < th dose independent rect. 13 23
336 18.60 wind 9.0 30 < th dose dependent rect. 16 1
339 18.60 humidity 80.0 90 < th dose dependent rect. 1 2
340 18.60 humidity 80.0 90 < th dose dependent rect. 24 4
343 18.60 atmosphere 995.0 90 > th dose dependent rect. 3 8
352 18.61 humidity 80.0 10 < th dose independent rect. 12 1
366 18.61 temperature 15.0 90 > th dose independent rect. 3 8
367 18.61 humidity 50.0 90 > th dose independent rect. 3 8
380 18.62 temperature 10.0 1440 > th dose independent rect. 17 1
384 18.62 radiation 30.0 1440 < th dose independent rect. 17 1
391 18.62 precipitation 0.1 90 < th dose independent rect. 3 8
392 18.62 radiation 40.0 90 < th dose independent rect. 11 16
393 18.62 temperature 10.0 1440 > th dose independent rect. 18 23
402 18.62 precipitation 0.1 90 < th dose dependent rect. 3 8
403 18.63 wind 7.0 10 < th dose independent rect. 12 1
408 18.63 atmosphere 995.0 90 > th dose independent rect. 3 8
409 18.63 atmosphere 1015.0 90 < th dose independent rect. 3 8
410 18.63 temperature 10.0 90 > th dose independent rect. 11 16
411 18.63 wind 7.0 90 < th dose independent rect. 14 21
431 18.64 wind 1.0 90 < th dose independent rect. 13 1
435 18.64 humidity 80.0 90 < th dose independent rect. 11 3
438 18.64 precipitation 0.1 90 < th dose independent rect. 11 16
439 18.64 wind 7.0 10 < th dose independent rect. 14 22
442 18.64 temperature 25.0 10 > th dose dependent rect. 12 2
444 18.64 precipitation 0.1 90 < th dose dependent rect. 11 16
445 18.65 atmosphere 1000.0 10 > th dose independent rect. 12 1
450 18.65 atmosphere 1000.0 10 > th dose dependent rect. 4 7
452 18.66 wind 1.0 10 > th dose independent rect. 12 1
471 18.66 wind 9.0 90 < th dose independent rect. 11 16
475 18.66 humidity 90.0 10 < th dose dependent rect. 16 1
477 18.66 atmosphere 995.0 10 > th dose dependent rect. 12 1
478 18.66 wind 1.0 90 > th dose dependent rect. 11 2
485 18.67 radiation 10.0 10 > th dose independent rect. 12 1
500 18.67 temperature 25.0 30 > th dose independent rect. 17 18
502 18.67 wind 7.0 30 < th dose dependent rect. 12 1
504 18.67 temperature 10.0 10 > th dose dependent rect. 12 1
506 18.67 humidity 80.0 1440 > th dose dependent rect. 12 1
517 18.67 wind 9.0 90 < th dose dependent rect. 3 8
528 18.68 temperature 10.0 10 > th dose independent rect. 12 1
533 18.68 atmosphere 1015.0 10 < th dose independent rect. 12 1
535 18.68 precipitation 0.1 10 < th dose independent rect. 12 1
538 18.68 radiation 40.0 90 < th dose independent rect. 11 3
542 18.68 temperature 10.0 10 > th dose independent rect. 13 23
543 18.68 humidity 90.0 30 < th dose dependent rect. 12 1
546 18.68 precipitation 0.1 10 < th dose dependent rect. 12 1
554 18.68 temperature 25.0 10 > th dose dependent rect. 18 17
558 18.69 temperature 30.0 30 < th dose independent rect. 12 1
563 18.69 humidity 60.0 720 > th dose independent rect. 19 8
566 18.69 atmosphere 1000.0 10 > th dose independent rect. 14 21
584 18.70 humidity 60.0 10 > th dose independent rect. 12 1
585 18.70 humidity 80.0 1440 > th dose independent rect. 12 1
598 18.70 wind 9.0 720 < th dose independent rect. 19 8
605 18.70 wind 7.0 10 < th dose independent rect. 6 14
609 18.70 wind 9.0 720 < th dose independent rect. 3 16
612 18.70 atmosphere 1000.0 30 > th dose independent rect. 17 18
615 18.70 atmosphere 1000.0 10 > th dose independent rect. 17 23
624 18.70 radiation 40.0 30 < th dose dependent rect. 12 1
629 18.70 wind 1.0 10 > th dose dependent rect. 11 3
634 18.70 atmosphere 995.0 30 > th dose dependent rect. 14 21
641 18.71 atmosphere 1005.0 30 > th dose independent rect. 5 6
642 18.71 wind 9.0 720 < th dose independent rect. 7 8
643 18.71 temperature 10.0 720 > th dose independent rect. 19 8
644 18.71 temperature 30.0 720 < th dose independent rect. 19 8
647 18.71 atmosphere 995.0 720 > th dose independent rect. 19 8
648 18.71 radiation 40.0 30 < th dose independent rect. 3 8
649 18.71 radiation 1.0 720 < th dose independent rect. 19 8
656 18.71 temperature 10.0 720 > th dose independent rect. 3 16
658 18.71 radiation 40.0 30 < th dose independent rect. 14 21
661 18.71 atmosphere 995.0 30 > th dose independent rect. 3 23
665 18.71 atmosphere 1015.0 90 < th dose dependent rect. 12 1
669 18.71 temperature 10.0 270 > th dose dependent rect. 3 6
673 18.71 radiation 1.0 720 < th dose dependent rect. 19 8
679 18.72 wind 5.0 30 > th dose independent rect. 12 1
686 18.72 temperature 10.0 720 > th dose independent rect. 7 8
687 18.72 atmosphere 1015.0 720 < th dose independent rect. 7 8
688 18.72 humidity 80.0 90 < th dose independent rect. 24 14
689 18.72 temperature 10.0 720 > th dose independent rect. 15 16
691 18.72 wind 7.0 30 < th dose independent rect. 3 17
693 18.72 humidity 80.0 90 < th dose independent rect. 20 18
699 18.72 wind 5.0 30 > th dose dependent rect. 12 1
713 18.73 wind 1.0 270 > th dose independent rect. 2 7
721 18.73 radiation 40.0 720 < th dose independent rect. 15 16
724 18.73 radiation 30.0 10 < th dose independent rect. 17 18
726 18.73 wind 1.0 30 > th dose independent rect. 14 21
747 18.74 temperature 25.0 270 > th dose independent rect. 6 2
757 18.74 temperature 30.0 90 < th dose independent rect. 3 8
773 18.74 precipitation 0.1 10 < th dose independent rect. 3 23
774 18.74 wind 1.0 10 > th dose dependent rect. 12 1
781 18.74 humidity 50.0 10 > th dose dependent rect. 12 1
784 18.74 temperature 25.0 270 > th dose dependent rect. 6 2
786 18.74 atmosphere 995.0 270 > th dose dependent rect. 3 5
791 18.74 wind 9.0 10 < th dose dependent rect. 6 14
792 18.74 atmosphere 995.0 30 > th dose dependent rect. 17 18
793 18.74 precipitation 0.1 10 < th dose dependent rect. 3 23
799 18.75 radiation 40.0 270 < th dose independent rect. 9 4
800 18.75 humidity 80.0 90 < th dose independent rect. 9 5
816 18.75 atmosphere 1015.0 720 < th dose independent rect. 3 16
820 18.75 wind 1.0 30 > th dose independent rect. 17 18
821 18.75 wind 7.0 90 < th dose independent rect. 17 18
830 18.75 humidity 90.0 10 < th dose dependent rect. 3 2
855 18.75 temperature 25.0 10 > th dose dependent rect. 22 13
863 18.76 temperature 10.0 1440 > th dose independent rect. 13 1
867 18.76 atmosphere 995.0 1440 > th dose independent rect. 13 1
871 18.76 atmosphere 1000.0 10 < th dose independent rect. 13 1
883 18.76 precipitation 0.1 90 < th dose independent rect. 11 3
885 18.76 temperature 10.0 1440 > th dose independent rect. 4 8
889 18.76 atmosphere 995.0 1440 > th dose independent rect. 4 8
892 18.76 temperature 25.0 30 > th dose independent rect. 22 13
896 18.76 temperature 10.0 1440 > th dose independent rect. 12 16
899 18.76 atmosphere 995.0 90 > th dose independent rect. 11 16
900 18.76 atmosphere 1015.0 720 < th dose independent rect. 1 16
901 18.76 atmosphere 1015.0 270 < th dose independent rect. 9 18
907 18.76 temperature 10.0 1440 > th dose independent rect. 14 23
915 18.76 precipitation 0.1 90 < th dose dependent rect. 11 3
932 18.76 wind 1.0 30 < th dose dependent rect. 13 14
938 18.76 wind 9.0 90 < th dose dependent rect. 14 21
950 18.77 temperature 10.0 90 > th dose independent rect. 11 3
952 18.77 atmosphere 995.0 90 > th dose independent rect. 11 3
953 18.77 atmosphere 1015.0 90 < th dose independent rect. 11 3
965 18.77 temperature 15.0 720 > th dose independent rect. 9 8
976 18.77 temperature 15.0 720 > th dose independent rect. 1 16
980 18.77 wind 1.0 270 > th dose independent rect. 9 17
986 18.77 temperature 25.0 30 > th dose independent rect. 14 21
987 18.77 temperature 10.0 90 > th dose independent rect. 14 21
991 18.77 precipitation 0.1 30 < th dose independent rect. 17 23
994 18.77 radiation 1.0 30 > th dose dependent rect. 12 1
995 18.77 radiation 40.0 90 > th dose dependent rect. 12 1