Os03g0693800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin).
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Os03g0693800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.6 | 0.667 | 4.87 | -3.08 | 0.28 | 0.821 | 0.431 | -10.4 | -0.0116 | 15.7 | 25.47 | 944 | -- | -- |
| 212.39 | 0.684 | 4.61 | -0.971 | 0.723 | -1.13 | 1.16 | -- | 0.515 | 15.2 | 25.47 | 944 | -- | -- |
| 201.97 | 0.662 | 4.88 | -3.16 | 0.292 | 0.813 | -- | -10.2 | -0.0301 | 15.9 | 25.42 | 989 | -- | -- |
| 215.37 | 0.688 | 4.62 | -0.974 | 0.652 | -1.11 | -- | -- | 0.473 | 15.8 | 26.79 | 39 | -- | -- |
| 206.43 | 0.669 | 4.9 | -3.25 | -- | 0.885 | -- | -11.2 | -0.0329 | -- | 25.85 | 978 | -- | -- |
| 231.84 | 0.714 | 4.62 | -1.14 | 0.266 | -- | 0.919 | -- | 0.447 | 14.6 | -- | -- | -- | -- |
| 232.91 | 0.715 | 4.63 | -1.11 | 0.341 | -- | -- | -- | 0.454 | 16.8 | -- | -- | -- | -- |
| 232.87 | 0.711 | 4.62 | -1.06 | -- | -0.594 | -- | -- | 0.451 | -- | 27.1 | 8 | -- | -- |
| 239.11 | 0.72 | 4.58 | -- | 0.845 | -1.27 | -- | -- | 0.704 | 15.7 | 24.2 | 10 | -- | -- |
| 239.08 | 0.722 | 4.62 | -1.13 | -- | -- | -- | -- | 0.445 | -- | -- | -- | -- | -- |
| 265.68 | 0.762 | 4.6 | -- | 0.362 | -- | -- | -- | 0.578 | 16.7 | -- | -- | -- | -- |
| 262.22 | 0.754 | 4.6 | -- | -- | -0.751 | -- | -- | 0.565 | -- | 27 | 8 | -- | -- |
| 272.63 | 0.771 | 4.59 | -- | -- | -- | -- | -- | 0.57 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.93 | wind | 9 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 3 | 195.29 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 17 | 195.43 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 18 | 195.64 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 19 | 195.68 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 33 | 195.82 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 34 | 195.83 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 35 | 195.85 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 7 |
| 41 | 196.03 | temperature | 30 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 47 | 196.32 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 52 | 197.20 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 8 |
| 58 | 197.58 | wind | 9 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 61 | 197.65 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 66 | 198.00 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 8 |
| 68 | 198.03 | temperature | 25 | 720 | > th | dose dependent | sin | 10 | NA |
| 70 | 198.15 | humidity | 80 | 14400 | < th | dose dependent | rect. | 20 | 10 |
| 76 | 198.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 82 | 198.33 | humidity | 80 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 101 | 198.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 103 | 198.70 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 155 | 199.56 | wind | 9 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 165 | 199.70 | humidity | 80 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 167 | 199.71 | humidity | 80 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 177 | 199.87 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 197 | 200.12 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 203 | 200.16 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 19 | 23 |
| 218 | 200.32 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 225 | 200.40 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 249 | 200.70 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 298 | 201.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 300 | 201.28 | humidity | 80 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 331 | 201.55 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 7 | 20 |
| 332 | 201.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 387 | 201.90 | humidity | 80 | 14400 | < th | dose independent | sin | 10 | NA |
| 459 | 202.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 482 | 202.67 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 513 | 202.82 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 7 | 23 |
| 561 | 202.96 | humidity | 80 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 601 | 203.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 4 |
| 624 | 203.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 627 | 203.30 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 14 |
| 631 | 203.33 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 9 |
| 645 | 203.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 12 |
| 656 | 203.42 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 18 |
| 759 | 204.10 | humidity | 80 | 14400 | > th | dose independent | sin | 9 | NA |
| 811 | 204.38 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 9 | 23 |
| 831 | 204.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 12 |
| 839 | 204.51 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 849 | 204.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 852 | 204.55 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 859 | 204.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 893 | 204.71 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 897 | 204.73 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 907 | 204.76 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 913 | 204.78 | atmosphere | 1000 | 30 | > th | dose independent | sin | 23 | NA |