Os03g0694000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin).
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Os03g0694000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 363.73 | 0.896 | 9.77 | -6.02 | 0.278 | 2.39 | -1.33 | -12 | 0.44 | 23 | 24.28 | 3482 | -- | -- |
| 392.31 | 0.922 | 9.51 | -3.75 | 0.397 | 1.98 | -1.67 | -- | 0.655 | 22.4 | 9.786 | 9656 | -- | -- |
| 370.86 | 0.897 | 9.77 | -5.96 | 0.288 | 2.42 | -- | -12.2 | 0.472 | 21.9 | 24.46 | 3507 | -- | -- |
| 402.99 | 0.935 | 9.51 | -3.68 | 0.437 | 1.97 | -- | -- | 0.663 | 21.5 | 9.81 | 9746 | -- | -- |
| 375.68 | 0.903 | 9.77 | -6.09 | -- | 2.54 | -- | -12.8 | 0.432 | -- | 24.41 | 3550 | -- | -- |
| 457.36 | 1 | 9.37 | -2.62 | 0.483 | -- | -1.59 | -- | 1.28 | 22.6 | -- | -- | -- | -- |
| 467.63 | 1.01 | 9.37 | -2.55 | 0.497 | -- | -- | -- | 1.28 | 22.2 | -- | -- | -- | -- |
| 413.84 | 0.947 | 9.5 | -3.7 | -- | 2.04 | -- | -- | 0.648 | -- | 9.779 | 9589 | -- | -- |
| 619.15 | 1.17 | 9.31 | -- | 0.509 | -1.33 | -- | -- | 1.54 | 19.7 | 28.37 | 4246 | -- | -- |
| 482.6 | 1.03 | 9.36 | -2.54 | -- | -- | -- | -- | 1.28 | -- | -- | -- | -- | -- |
| 639.16 | 1.18 | 9.31 | -- | 0.487 | -- | -- | -- | 1.57 | 21.8 | -- | -- | -- | -- |
| 421.32 | 0.956 | 9.34 | -- | -- | -2 | -- | -- | 1.38 | -- | 35.1 | 47520 | -- | -- |
| 653.31 | 1.19 | 9.29 | -- | -- | -- | -- | -- | 1.57 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 337.34 | temperature | 30 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 2 | 337.40 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 3 | 337.43 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 4 | 337.49 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 8 | 337.61 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 22 | 337.62 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 26 | 337.62 | temperature | 30 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 54 | 337.73 | temperature | 30 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 125 | 338.34 | temperature | 30 | 43200 | < th | dose independent | sin | 4 | NA |
| 130 | 338.42 | temperature | 30 | 43200 | > th | dose independent | sin | 3 | NA |
| 222 | 338.92 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 237 | 338.93 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 267 | 339.09 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 269 | 339.10 | temperature | 30 | 43200 | < th | dose independent | no | NA | NA |
| 288 | 339.10 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 17 |
| 357 | 339.13 | temperature | 30 | 43200 | > th | dose independent | no | NA | NA |
| 466 | 339.15 | temperature | 30 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 553 | 339.35 | temperature | 30 | 43200 | > th | dose dependent | sin | 6 | NA |
| 595 | 339.43 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 820 | 340.67 | temperature | 30 | 43200 | > th | dose dependent | no | NA | NA |
| 977 | 341.27 | temperature | 30 | 43200 | > th | dose dependent | rect. | 14 | 23 |