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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0277500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Germin-like protein subfamily 2 member 4 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0507) R2 : 0.314
β1 : -1.23 (0.225) R2dD : 0.073 R2D : 0.171
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.83 (0.25) R2dE : 0.136 R2E : 0.242
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0726 (0.118) R2dN8 : 0.00102 R2N8 : 0.00369
σ : 0.922
deviance : 392.12
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.8
memory length : 3840
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
378.98 0.915 3.26 -1.04 0.427 1.16 0.477 -2.1 -0.00725 8.03 19.78 3802 -- --
381.51 0.91 3.34 -1.32 0.449 1.71 0.603 -- -0.127 8.02 18.8 3856 -- --
379.14 0.907 3.27 -1.04 0.425 1.24 -- -1.91 -0.0162 8.6 19.52 3798 -- --
381.71 0.91 3.34 -1.25 0.436 1.8 -- -- -0.0871 8.46 18.87 3860 -- --
389.33 0.919 3.28 -1.04 -- 1.29 -- -1.83 -0.0122 -- 19.52 3768 -- --
426.02 0.968 3.42 -2.22 0.455 -- 0.203 -- -0.466 8.79 -- -- -- --
426.11 0.967 3.42 -2.22 0.452 -- -- -- -0.465 9.05 -- -- -- --
392.12 0.922 3.35 -1.23 -- 1.83 -- -- -0.0726 -- 18.8 3840 -- --
401.77 0.934 3.3 -- 0.372 2.4 -- -- 0.202 8.71 19.08 11320 -- --
437.88 0.978 3.43 -2.22 -- -- -- -- -0.462 -- -- -- -- --
555.45 1.1 3.37 -- 0.452 -- -- -- -0.218 9.42 -- -- -- --
406.43 0.939 3.29 -- -- 2.43 -- -- 0.262 -- 18.43 13971 -- --
567.42 1.11 3.38 -- -- -- -- -- -0.216 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 378.28 temperature 20 4320 < th dose independent rect. 16 10
4 378.76 temperature 20 4320 > th dose independent rect. 16 10
42 380.11 wind 3 4320 < th dose independent rect. 8 1
51 380.22 temperature 20 4320 < th dose independent sin 15 NA
52 380.26 temperature 20 4320 < th dose independent rect. 19 1
57 380.34 wind 1 14400 < th dose independent rect. 22 5
69 380.64 temperature 20 4320 > th dose independent sin 15 NA
85 380.86 wind 1 14400 > th dose independent rect. 22 5
94 381.02 wind 3 4320 > th dose independent rect. 8 1
96 381.06 humidity 90 43200 > th dose dependent rect. 13 1
127 381.50 radiation 30 4320 > th dose dependent rect. 15 17
128 381.53 wind 1 14400 > th dose independent rect. 20 8
143 381.78 wind 1 14400 < th dose independent rect. 19 9
184 382.32 temperature 15 4320 > th dose dependent rect. 19 1
229 383.05 wind 1 14400 < th dose dependent rect. 19 9
230 383.07 wind 1 14400 < th dose dependent rect. 21 7
232 383.08 temperature 25 4320 < th dose dependent rect. 19 1
241 383.26 temperature 20 4320 < th dose independent rect. 22 1
246 383.30 humidity 50 43200 < th dose dependent rect. 8 1
265 383.64 radiation 20 4320 < th dose independent rect. 8 1
270 383.69 humidity 90 43200 > th dose dependent rect. 12 3
284 383.93 temperature 20 4320 > th dose independent rect. 22 1
286 383.95 wind 1 14400 < th dose dependent sin 13 NA
297 384.08 temperature 20 4320 < th dose independent rect. 16 20
320 384.21 wind 1 14400 < th dose dependent rect. 17 12
346 384.43 humidity 50 43200 < th dose dependent rect. 19 14
357 384.51 temperature 20 4320 > th dose independent rect. 16 20
362 384.54 atmosphere 1010 14400 < th dose independent rect. 11 1
364 384.55 wind 1 43200 > th dose independent sin 15 NA
377 384.63 radiation 20 4320 < th dose independent rect. 6 3
388 384.66 radiation 1 43200 > th dose independent rect. 13 1
389 384.67 humidity 60 43200 < th dose independent rect. 19 10
404 384.76 radiation 1 43200 < th dose independent rect. 13 1
406 384.76 radiation 20 4320 < th dose independent rect. 24 9
408 384.76 radiation 20 4320 < th dose independent rect. 20 13
412 384.76 radiation 1 43200 < th dose dependent rect. 13 1
413 384.77 wind 3 14400 < th dose independent rect. 7 7
424 384.80 atmosphere 1010 14400 > th dose independent rect. 11 1
429 384.80 wind 5 4320 < th dose dependent rect. 8 1
433 384.81 radiation 20 4320 < th dose independent rect. 2 7
447 384.86 wind 3 14400 > th dose independent rect. 7 7
452 384.89 humidity 60 43200 < th dose dependent rect. 19 12
460 384.94 temperature 20 4320 < th dose independent no NA NA
473 385.02 temperature 20 4320 < th dose independent rect. 5 23
476 385.03 temperature 20 4320 < th dose independent rect. 3 23
504 385.18 radiation 40 4320 < th dose independent rect. 15 17
510 385.19 temperature 20 4320 < th dose independent rect. 22 23
516 385.21 temperature 20 4320 > th dose independent no NA NA
517 385.21 temperature 15 4320 < th dose independent rect. 1 5
524 385.23 atmosphere 995 43200 < th dose independent rect. 21 17
531 385.25 radiation 1 14400 > th dose independent rect. 11 1
539 385.27 temperature 20 4320 < th dose independent rect. 1 23
541 385.28 humidity 90 14400 < th dose independent rect. 4 1
545 385.29 temperature 20 4320 > th dose independent rect. 4 23
559 385.38 radiation 1 14400 < th dose independent rect. 11 1
560 385.38 radiation 1 14400 < th dose dependent rect. 11 1
562 385.39 temperature 20 4320 > th dose independent rect. 21 23
570 385.43 radiation 10 720 < th dose independent rect. 22 8
589 385.48 atmosphere 995 43200 > th dose independent rect. 19 19
590 385.48 temperature 20 4320 > th dose independent rect. 18 23
600 385.51 temperature 15 4320 < th dose independent rect. 23 7
605 385.54 wind 3 14400 < th dose dependent rect. 21 3
665 385.71 humidity 60 43200 < th dose independent rect. 21 10
691 385.80 wind 3 43200 < th dose dependent rect. 8 1
697 385.83 atmosphere 1010 14400 < th dose independent rect. 8 4
706 385.86 atmosphere 1010 14400 > th dose independent rect. 8 4
744 385.97 humidity 60 43200 > th dose independent rect. 19 10
753 385.99 atmosphere 995 43200 > th dose independent rect. 22 14
760 386.02 wind 3 43200 < th dose independent rect. 10 1
771 386.06 temperature 20 4320 > th dose independent rect. 16 1
776 386.07 wind 3 43200 > th dose independent rect. 8 2
840 386.22 radiation 30 4320 > th dose independent rect. 16 16
854 386.27 wind 5 43200 < th dose dependent rect. 10 1
864 386.31 radiation 40 4320 < th dose independent rect. 24 8
873 386.33 temperature 15 43200 > th dose independent rect. 23 1
905 386.42 humidity 50 43200 < th dose dependent rect. 5 4
912 386.43 radiation 10 4320 > th dose dependent rect. 6 2
913 386.43 humidity 50 43200 < th dose dependent rect. 3 6
941 386.50 humidity 60 43200 < th dose independent rect. 21 8
942 386.51 temperature 15 43200 < th dose independent rect. 21 1
945 386.51 temperature 15 4320 > th dose dependent sin 14 NA
949 386.52 radiation 40 4320 < th dose independent rect. 20 12
951 386.52 atmosphere 995 43200 < th dose dependent sin 9 NA
956 386.53 wind 3 43200 < th dose dependent rect. 18 6
961 386.55 wind 3 43200 > th dose independent rect. 10 1
965 386.55 wind 1 43200 > th dose independent rect. 15 13
976 386.57 temperature 15 43200 > th dose independent rect. 20 4
987 386.59 atmosphere 1010 43200 > th dose independent rect. 17 1
997 386.62 radiation 40 4320 < th dose independent rect. 6 2