Os01g0249200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nectarin 1 precursor (EC 1.15.1.1) (Superoxide dismutase [Mn]).
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Os01g0249200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nectarin 1 precursor (EC 1.15.1.1) (Superoxide dismutase [Mn]).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 497.76 | 1.05 | 6.95 | -5.02 | 0.787 | 1.82 | -0.493 | -2.18 | -0.3 | 6.63 | 27.19 | 1302 | -- | -- |
| 499.36 | 1.04 | 6.93 | -4.54 | 0.816 | 1.65 | -0.479 | -- | -0.253 | 6.67 | 27 | 1300 | -- | -- |
| 498.31 | 1.04 | 6.95 | -5.01 | 0.79 | 1.82 | -- | -2.16 | -0.299 | 6.72 | 27.2 | 1293 | -- | -- |
| 499.17 | 1.04 | 6.9 | -4.52 | 0.768 | 1.6 | -- | -- | -0.212 | 6.78 | 27.11 | 1293 | -- | -- |
| 530.2 | 1.07 | 6.96 | -4.92 | -- | 1.8 | -- | -1.71 | -0.29 | -- | 27 | 1312 | -- | -- |
| 610.11 | 1.16 | 6.9 | -4.02 | 0.87 | -- | -0.455 | -- | -0.222 | 5.7 | -- | -- | -- | -- |
| 610.61 | 1.16 | 6.9 | -4.02 | 0.868 | -- | -- | -- | -0.22 | 5.74 | -- | -- | -- | -- |
| 530.5 | 1.07 | 6.91 | -4.54 | -- | 1.62 | -- | -- | -0.208 | -- | 27 | 1319 | -- | -- |
| 1005.62 | 1.48 | 6.8 | -- | 0.751 | 1.13 | -- | -- | 0.404 | 6.19 | 30.4 | 1560 | -- | -- |
| 649.68 | 1.19 | 6.91 | -3.99 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 1036.62 | 1.51 | 6.79 | -- | 0.806 | -- | -- | -- | 0.228 | 5.96 | -- | -- | -- | -- |
| 1029.47 | 1.49 | 6.76 | -- | -- | 0.888 | -- | -- | 0.438 | -- | 30.6 | 1242 | -- | -- |
| 1070.3 | 1.53 | 6.81 | -- | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 492.89 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 15 |
| 2 | 493.95 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 10 |
| 7 | 494.10 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 8 | 494.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 19 | 495.64 | humidity | 70 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 28 | 496.45 | humidity | 70 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 39 | 496.82 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 65 | 496.98 | temperature | 30 | 1440 | < th | dose independent | sin | 13 | NA |
| 67 | 497.22 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 13 |
| 71 | 497.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 72 | 497.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 76 | 497.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 81 | 497.61 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 82 | 497.61 | humidity | 70 | 4320 | < th | dose dependent | rect. | 19 | 12 |
| 93 | 497.68 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 109 | 497.85 | radiation | 30 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 129 | 497.93 | temperature | 30 | 1440 | > th | dose independent | sin | 12 | NA |
| 197 | 499.59 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 234 | 500.52 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 4 |
| 275 | 500.84 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 345 | 501.43 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 386 | 502.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 402 | 502.17 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 408 | 502.27 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 425 | 502.69 | humidity | 70 | 1440 | > th | dose independent | sin | 13 | NA |
| 471 | 503.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 479 | 503.43 | humidity | 70 | 1440 | < th | dose independent | sin | 13 | NA |
| 514 | 503.56 | temperature | 30 | 1440 | > th | dose dependent | sin | 14 | NA |
| 587 | 503.90 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 590 | 503.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 598 | 503.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 602 | 503.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 605 | 504.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 667 | 504.30 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 697 | 504.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 715 | 504.52 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 723 | 504.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 726 | 504.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 737 | 504.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 741 | 504.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 762 | 504.60 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 779 | 504.61 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 904 | 505.16 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |