Os03g0804700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Germin-like protein subfamily T member 1 precursor.
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Os03g0804700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Germin-like protein subfamily T member 1 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.03 | 0.607 | 2.89 | 0.142 | 0.148 | -0.229 | 0.208 | -2.74 | 0.134 | 15.9 | 3.5 | 1562 | -- | -- |
| 171.25 | 0.609 | 2.93 | 0.208 | 0.113 | -0.273 | 0.191 | -- | 0.157 | 16.5 | 2.7 | 3945 | -- | -- |
| 167.16 | 0.602 | 2.89 | 0.146 | 0.15 | -0.225 | -- | -2.72 | 0.135 | 15.9 | 3.476 | 1560 | -- | -- |
| 171.05 | 0.609 | 2.92 | 0.149 | 0.14 | -0.396 | -- | -- | 0.207 | 17 | 2.643 | 3927 | -- | -- |
| 168.38 | 0.604 | 2.89 | 0.141 | -- | -0.22 | -- | -2.71 | 0.131 | -- | 3.477 | 1560 | -- | -- |
| 172.86 | 0.616 | 2.94 | 0.242 | 0.144 | -- | 0.138 | -- | 0.0951 | 15.9 | -- | -- | -- | -- |
| 172.91 | 0.616 | 2.94 | 0.244 | 0.146 | -- | -- | -- | 0.0959 | 16.1 | -- | -- | -- | -- |
| 172.04 | 0.611 | 2.91 | 0.154 | -- | -0.405 | -- | -- | 0.216 | -- | 2.69 | 3980 | -- | -- |
| 171.66 | 0.61 | 2.91 | -- | 0.137 | -0.432 | -- | -- | 0.216 | 17.1 | 2.654 | 3931 | -- | -- |
| 174.07 | 0.616 | 2.93 | 0.238 | -- | -- | -- | -- | 0.092 | -- | -- | -- | -- | -- |
| 174.48 | 0.618 | 2.94 | -- | 0.141 | -- | -- | -- | 0.0687 | 16.1 | -- | -- | -- | -- |
| 172.56 | 0.612 | 2.9 | -- | -- | -0.479 | -- | -- | 0.228 | -- | 2.63 | 4090 | -- | -- |
| 175.56 | 0.618 | 2.94 | -- | -- | -- | -- | -- | 0.0656 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.38 | wind | 9.0 | 90 | > th | dose dependent | rect. | 22 | 12 |
| 2 | 158.74 | wind | 9.0 | 90 | > th | dose independent | rect. | 22 | 12 |
| 3 | 158.83 | wind | 9.0 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 11 | 158.83 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 22 | 4 |
| 19 | 158.84 | wind | 9.0 | 1440 | > th | dose independent | rect. | 22 | 1 |
| 23 | 158.84 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 22 | 1 |
| 27 | 158.95 | wind | 7.0 | 90 | > th | dose independent | rect. | 22 | 1 |
| 29 | 158.95 | wind | 7.0 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 31 | 158.96 | wind | 9.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 39 | 158.96 | wind | 9.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 118 | 162.79 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 119 | 162.79 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 120 | 162.82 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 121 | 162.93 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 132 | 163.70 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 140 | 163.78 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 20 |
| 154 | 163.83 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 201 | 164.04 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 16 |
| 217 | 164.10 | wind | 9.0 | 720 | > th | dose independent | rect. | 19 | 4 |
| 273 | 164.21 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 0 | NA |
| 275 | 164.21 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 278 | 164.23 | humidity | 90.0 | 14400 | > th | dose independent | sin | 2 | NA |
| 283 | 164.25 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 9 |
| 285 | 164.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 343 | 164.38 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 347 | 164.38 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 348 | 164.38 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 382 | 164.42 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 406 | 164.46 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 416 | 164.47 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 433 | 164.49 | wind | 7.0 | 270 | > th | dose dependent | rect. | 19 | 5 |
| 467 | 164.51 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 520 | 164.57 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 535 | 164.59 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 547 | 164.60 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 580 | 164.62 | humidity | 90.0 | 14400 | < th | dose independent | sin | 2 | NA |
| 620 | 164.66 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 621 | 164.66 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 623 | 164.66 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 647 | 164.70 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 659 | 164.72 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 7 |
| 755 | 164.84 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 12 |
| 772 | 164.85 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 773 | 164.85 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 786 | 164.87 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 789 | 164.87 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 872 | 164.97 | wind | 9.0 | 14400 | > th | dose independent | rect. | 24 | 11 |
| 960 | 165.04 | humidity | 90.0 | 14400 | > th | dose independent | sin | 14 | NA |