Os03g0651800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Germin-like protein subfamily 2 member 1 precursor.
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Os03g0651800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Germin-like protein subfamily 2 member 1 precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.34 | 0.587 | 8.81 | 0.0682 | 1.42 | -1.72 | 1.5 | -1.7 | -0.577 | 7.09 | 21.5 | 2885 | -- | -- |
| 157.9 | 0.585 | 8.75 | 0.247 | 1.33 | -1.37 | 1.57 | -- | -0.487 | 6.98 | 22.2 | 2098 | -- | -- |
| 159.61 | 0.588 | 8.8 | 0.0106 | 1.34 | -1.56 | -- | -1.38 | -0.604 | 6.87 | 21.72 | 2238 | -- | -- |
| 163.22 | 0.595 | 8.75 | 0.285 | 1.34 | -1.4 | -- | -- | -0.479 | 6.91 | 22.26 | 2218 | -- | -- |
| 250.23 | 0.737 | 8.82 | 0.191 | -- | -1.75 | -- | -1.38 | -0.504 | -- | 21.51 | 2084 | -- | -- |
| 227.05 | 0.706 | 8.86 | -0.323 | 1.39 | -- | 1.51 | -- | -0.97 | 7.24 | -- | -- | -- | -- |
| 233.17 | 0.715 | 8.86 | -0.292 | 1.39 | -- | -- | -- | -0.973 | 7.22 | -- | -- | -- | -- |
| 255.68 | 0.745 | 8.78 | 0.47 | -- | -1.6 | -- | -- | -0.444 | -- | 21.7 | 2089 | -- | -- |
| 164.99 | 0.598 | 8.76 | -- | 1.34 | -1.29 | -- | -- | -0.535 | 7.01 | 22.31 | 2073 | -- | -- |
| 335.79 | 0.856 | 8.89 | -0.267 | -- | -- | -- | -- | -0.949 | -- | -- | -- | -- | -- |
| 235.41 | 0.718 | 8.85 | -- | 1.39 | -- | -- | -- | -0.94 | 7.24 | -- | -- | -- | -- |
| 218.93 | 0.689 | 8.76 | -- | -- | -1.42 | -- | -- | -0.37 | -- | 24.9 | 494 | -- | -- |
| 337.66 | 0.858 | 8.88 | -- | -- | -- | -- | -- | -0.919 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 149.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 19 | 154.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 20 | 154.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 64 | 155.44 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 97 | 156.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 259 | 158.17 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 282 | 158.45 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 530 | 160.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 557 | 160.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 565 | 160.72 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 593 | 160.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 598 | 160.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 642 | 161.26 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 696 | 161.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 857 | 162.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 873 | 162.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 891 | 162.82 | temperature | 20 | 1440 | > th | dose dependent | sin | 11 | NA |
| 1000 | 163.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |