Os03g0693700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin).
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Os03g0693700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oxalate oxidase 1 (EC 1.2.3.4) (Germin).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.12 | 0.482 | 3.79 | 0.874 | 0.392 | 3.01 | 0.251 | 5.17 | 0.0732 | 8.22 | 21.15 | 5431 | -- | -- |
| 112.87 | 0.495 | 3.65 | 1 | 0.369 | 1.16 | 0.313 | -- | 0.127 | 7.62 | 24.8 | 5153 | -- | -- |
| 105.3 | 0.478 | 3.79 | 0.886 | 0.397 | 3.06 | -- | 5.28 | 0.0699 | 8.23 | 21.07 | 5438 | -- | -- |
| 112.8 | 0.495 | 3.65 | 1.01 | 0.374 | 1.15 | -- | -- | 0.154 | 8.29 | 24.99 | 5148 | -- | -- |
| 113.47 | 0.496 | 3.8 | 0.87 | -- | 3.03 | -- | 5.24 | 0.0749 | -- | 21.06 | 5206 | -- | -- |
| 130.89 | 0.536 | 3.71 | 0.404 | 0.4 | -- | 0.289 | -- | -0.138 | 8.63 | -- | -- | -- | -- |
| 131.16 | 0.536 | 3.71 | 0.413 | 0.399 | -- | -- | -- | -0.138 | 8.68 | -- | -- | -- | -- |
| 119.31 | 0.509 | 3.65 | 0.927 | -- | 1.13 | -- | -- | 0.149 | -- | 26.4 | 3599 | -- | -- |
| 126.34 | 0.526 | 3.69 | -- | 0.497 | 0.937 | -- | -- | -0.0725 | 10.7 | 40.42 | 2267 | -- | -- |
| 140.16 | 0.553 | 3.72 | 0.414 | -- | -- | -- | -- | -0.134 | -- | -- | -- | -- | -- |
| 135.65 | 0.545 | 3.72 | -- | 0.4 | -- | -- | -- | -0.184 | 8.6 | -- | -- | -- | -- |
| 129.54 | 0.53 | 3.7 | -- | -- | 0.922 | -- | -- | -0.0333 | -- | 31 | 656 | -- | -- |
| 144.68 | 0.561 | 3.73 | -- | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.97 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 2 | 104.09 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 4 | 104.63 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 7 | 105.06 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 8 | 105.11 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 9 | 105.13 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 10 | 105.14 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 4 |
| 12 | 105.19 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 5 |
| 14 | 105.20 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 15 | 105.20 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 28 | 105.37 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 34 | 105.44 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 59 | 105.80 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 90 | 106.01 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 100 | 106.11 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 146 | 106.38 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 151 | 106.43 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 153 | 106.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 154 | 106.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 159 | 106.47 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 164 | 106.49 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 172 | 106.51 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 173 | 106.51 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 16 | 7 |
| 175 | 106.51 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 176 | 106.51 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 198 | 106.54 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 224 | 106.56 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 225 | 106.56 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 274 | 106.59 | temperature | 20.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 291 | 106.60 | atmosphere | 1015.0 | 14400 | > th | dose dependent | sin | 14 | NA |
| 302 | 106.61 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 310 | 106.61 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 312 | 106.61 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 326 | 106.62 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 329 | 106.63 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 372 | 106.65 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 11 | 6 |
| 434 | 106.70 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 439 | 106.70 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 447 | 106.71 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 554 | 106.77 | atmosphere | 1010.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 570 | 106.78 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 643 | 106.81 | atmosphere | 1015.0 | 14400 | > th | dose independent | rect. | 8 | 16 |
| 690 | 106.83 | temperature | 20.0 | 4320 | > th | dose independent | sin | 11 | NA |
| 708 | 106.83 | atmosphere | 1015.0 | 14400 | < th | dose independent | rect. | 7 | 17 |
| 824 | 106.86 | temperature | 20.0 | 4320 | < th | dose dependent | sin | 9 | NA |
| 919 | 106.88 | atmosphere | 1015.0 | 14400 | > th | dose dependent | rect. | 4 | 20 |
| 934 | 106.89 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 953 | 106.89 | atmosphere | 1015.0 | 14400 | > th | dose dependent | no | NA | NA |