BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0130400 Os03g0130400|AK070255
(293 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0130400 Adenylate kinase, subfamily protein 486 e-138
Os08g0118900 Adenylate kinase family protein 154 7e-38
Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP trans... 116 2e-26
Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP trans... 115 3e-26
Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2... 100 2e-21
Os08g0288200 Adenylate kinase family protein 95 5e-20
Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48) 77 1e-14
Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) ... 75 8e-14
Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48) 73 2e-13
Os04g0671100 Hypothetical protein 68 8e-12
>Os03g0130400 Adenylate kinase, subfamily protein
Length = 293
Score = 486 bits (1252), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 59 RNVQWVFLGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGKL 118
RNVQWVFLGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGKL
Sbjct: 59 RNVQWVFLGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGKL 118
Query: 119 VSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVTDIDMVVNLKLREDVLV 178
VSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVTDIDMVVNLKLREDVLV
Sbjct: 119 VSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVTDIDMVVNLKLREDVLV 178
Query: 179 EKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTEEVVRN 238
EKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTEEVVRN
Sbjct: 179 EKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTEEVVRN 238
Query: 239 RLQIYNDMSQPVEGFYRQQGKLLEFDLPGGIPESWPKLLHVLNLEDQEEMKLATA 293
RLQIYNDMSQPVEGFYRQQGKLLEFDLPGGIPESWPKLLHVLNLEDQEEMKLATA
Sbjct: 239 RLQIYNDMSQPVEGFYRQQGKLLEFDLPGGIPESWPKLLHVLNLEDQEEMKLATA 293
>Os08g0118900 Adenylate kinase family protein
Length = 299
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 62 QWVFLGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGKLVSD 121
QWV +G PG K +A+RL+ +L VP+I+ G LVR EL+ + L ++A VN+GKLV +
Sbjct: 72 QWVVMGRPGPQKHAHAARLAEVLAVPYISMGTLVRQELSPASSLYKKIANSVNEGKLVPE 131
Query: 122 EIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVTDIDMVVNLKLREDVLVEKC 181
+II LL+KRL++G +GE+GFILDG PRT QAEILD + DID+V+N K ++ +++
Sbjct: 132 DIIFGLLTKRLEEGYNKGETGFILDGIPRTHMQAEILDEIVDIDLVLNFKCADNCFMKRR 191
Query: 182 LGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTEEVVRNRLQ 241
G IC CG+ F+ + N P + P + ++ D E +++
Sbjct: 192 FGGDICPHCGQLFDFSKTASSDRN---PSLGSCTWPSQVQHAAVLGLEDSRME----KMR 244
Query: 242 IYNDMSQPVEGFYRQQGKLLEFDLPGGIPESWPKLLHVLNLE 283
Y + ++ +E +YR+Q KL+E E+W L+ L+L+
Sbjct: 245 AYAEQTKLLEDYYRKQRKLMELKTSARPGETWQGLVAALHLQ 286
>Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 243
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 118/204 (57%), Gaps = 22/204 (10%)
Query: 62 QWVFLGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGKLVSD 121
+ + +G PG GKGT + + + H+ATGD++R +A+ PL V+ E +++G+LVSD
Sbjct: 32 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSD 91
Query: 122 EIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGV-----TDIDMVVNLKLREDV 176
++++ ++ + +KK Q GFILDGFPRTV QA+ LD + T +D V+N + + +
Sbjct: 92 DLVVGIIDEAMKKPSCQ--KGFILDGFPRTVVQAQKLDEMLEKKGTKVDKVLNFAIDDSI 149
Query: 177 LVEKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMS--KLITRADDTEE 234
L E+ GR I G++++ + P +P + ++ LI R DDT E
Sbjct: 150 LEERITGRWIHPSSGRSYHTK-------------FAPPKVPGVDDVTGEPLIQRKDDTAE 196
Query: 235 VVRNRLQIYNDMSQPVEGFYRQQG 258
V+++RL+ ++ ++PV +Y ++
Sbjct: 197 VLKSRLEAFHKQTEPVIDYYSKKA 220
>Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 241
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 115/200 (57%), Gaps = 18/200 (9%)
Query: 64 VFLGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGKLVSDEI 123
+ +G PG GKGT + + + H+ATGD++R +A+ PL ++ E +++G+LVSD++
Sbjct: 32 ILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL 91
Query: 124 IINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGV-----TDIDMVVNLKLREDVLV 178
++ ++ + +KK Q GFILDGFPRTV QA+ LD + T ID V+N + + +L
Sbjct: 92 VVGIIDEAMKKTSCQ--KGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILE 149
Query: 179 EKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTEEVVRN 238
E+ GR I G++++ K GL + P LI R DDT V+++
Sbjct: 150 ERITGRWIHPSSGRSYHTKFAPPK-TPGLDDVTGEP----------LIQRKDDTAAVLKS 198
Query: 239 RLQIYNDMSQPVEGFYRQQG 258
RL+ ++ ++PV +Y ++G
Sbjct: 199 RLEAFHVQTKPVIDYYTKKG 218
>Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP
transphosphorylase)
Length = 290
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 101/186 (54%), Gaps = 21/186 (11%)
Query: 61 VQWVFLGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGKLVS 120
++ + G P GKGT + G+ HI+ GDL+R E+A+ + E + +G+LV
Sbjct: 74 LKVMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVP 133
Query: 121 DEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVT-DIDMVVNLKLREDVLVE 179
DEI++N++ +RL + + Q E G++LDG+PR+ QA L+ + D+ + L + +++LVE
Sbjct: 134 DEIVVNMVKERLLQPDAQ-EKGWLLDGYPRSYSQAMALETLNIRPDIFILLDVPDELLVE 192
Query: 180 KCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNN--CMSKLITRADDTEEVVR 237
+ +GRR+ GK IY PP N S+L R DDTEE V+
Sbjct: 193 RVVGRRLDPVTGK-----------------IYHLKYSPPENEEIASRLTQRFDDTEEKVK 235
Query: 238 NRLQIY 243
RLQ +
Sbjct: 236 LRLQTH 241
>Os08g0288200 Adenylate kinase family protein
Length = 493
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 97/166 (58%), Gaps = 21/166 (12%)
Query: 88 HIATGDLVRDELASSGPLSVQLAEIVNQGKLVSDEIIINLLSKRLKKGEEQGESGFILDG 147
HI+TGDL+R E++S + + E ++ G LV D+++ +++ RL + + + E G++LDG
Sbjct: 2 HISTGDLLRAEVSSGTEIGKKAKEYMDNGMLVPDQVVTDMVVSRLSQPDVR-ERGWLLDG 60
Query: 148 FPRTVKQAEILDGVT-DIDMVVNLKLREDVLVEKCLGRRICGQCGKNFNLACIDVKGENG 206
+PR+ QA+ L+ + D+ + L++ +D+L+++C+GRR+ + GK
Sbjct: 61 YPRSYAQAQSLESMKIRPDIFIVLEVPDDILIDRCVGRRLDPETGK-------------- 106
Query: 207 LPPIYMAPLLPPNN--CMSKLITRADDTEEVVRNRLQIYNDMSQPV 250
IY PP N ++L+TR+DDT E V++RL Y S+ V
Sbjct: 107 ---IYHIKNFPPENDEVSARLVTRSDDTFEKVKSRLDTYKQNSEAV 149
>Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 214
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 92/218 (42%), Gaps = 46/218 (21%)
Query: 59 RNVQWVF-LGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGK 117
+ V VF LG PG GKGT + + G H++ GDL+R E+ S + ++ +GK
Sbjct: 25 KKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENMIKEGK 84
Query: 118 LVSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVTDID--MVVNLKLRED 175
+V E+ I LL + + K G F++DGFPR + + VT I V+ E+
Sbjct: 85 IVPSEVTIKLLQEAMIK---SGNDKFLIDGFPRNEENRAAFENVTKITPAFVLFFDCSEE 141
Query: 176 VLVEKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTEEV 235
+ + LGR +G R DD E
Sbjct: 142 EMERRLLGRN----------------QG------------------------RVDDNIET 161
Query: 236 VRNRLQIYNDMSQPVEGFYRQQGKLLEFDLPGGIPESW 273
+R R +++ + S PV +Y + K+ + D IPE +
Sbjct: 162 IRKRFKVFVESSLPVIEYYNAKDKVKKIDAAKPIPEVF 199
>Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
Length = 243
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 93/211 (44%), Gaps = 50/211 (23%)
Query: 59 RNVQWVF-LGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGK 117
+ + VF +G PG GKGT +++ + G H++ GDL+R+E + ++N+GK
Sbjct: 17 KKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGK 76
Query: 118 LVSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVTDIDMVVNLKLREDVL 177
LVS ++I+ LL K ++ E G F++DGFPR + + + I+ E +L
Sbjct: 77 LVSSDLIVKLLFKAMR---ESGNDKFLVDGFPRNEENRHAYENIIHIEP-------EFLL 126
Query: 178 VEKC----LGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTE 233
C + RRI +++ R DD
Sbjct: 127 FIDCSKEEMERRI-----------------------------------LNRNQGRDDDNI 151
Query: 234 EVVRNRLQIYNDMSQPVEGFYRQQGKLLEFD 264
+ +R R ++ + PV +Y ++GKL + D
Sbjct: 152 DTIRRRFDVFQQQTLPVIQYYEKRGKLRKVD 182
>Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48)
Length = 210
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 89/218 (40%), Gaps = 46/218 (21%)
Query: 59 RNVQWVF-LGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGK 117
+ V VF LG PG GKGT + + G H++ GDL+R E+ S + ++ +GK
Sbjct: 22 KKVTVVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGK 81
Query: 118 LVSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVTDID--MVVNLKLRED 175
+V E+ I LL + K E F++DGFPR + + VT I V+ E+
Sbjct: 82 IVPSEVTIKLLQDAMIKNEND---KFLIDGFPRNEENRAAFENVTKISPAFVLFFDCSEE 138
Query: 176 VLVEKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTEEV 235
+ + LGR +G R DD E
Sbjct: 139 EMERRLLGRN----------------QG------------------------RVDDNIET 158
Query: 236 VRNRLQIYNDMSQPVEGFYRQQGKLLEFDLPGGIPESW 273
+R R +++ + S PV Y + K+ + D I E +
Sbjct: 159 IRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVF 196
>Os04g0671100 Hypothetical protein
Length = 81
Score = 68.2 bits (165), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/44 (68%), Positives = 34/44 (77%)
Query: 248 QPVEGFYRQQGKLLEFDLPGGIPESWPKLLHVLNLEDQEEMKLA 291
+PVE FYR +GKLLEF+LPGGIPESWPKLL LNL+ E A
Sbjct: 37 EPVEDFYRARGKLLEFNLPGGIPESWPKLLQALNLDPGNERSAA 80
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.139 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,475,248
Number of extensions: 347111
Number of successful extensions: 845
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 10
Length of query: 293
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 193
Effective length of database: 11,814,401
Effective search space: 2280179393
Effective search space used: 2280179393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)