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Os12g0236400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Adenylate kinase A (EC 2.7.4.3) (ATP-AMP transphosphorylase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.15 (0.0288) R2 : 0.27
β1 : -1.37 (0.105) R2dD : 0.28 R2D : 0.255
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.161 (0.0614) R2dN8 : 0.0148 R2N8 : -0.0101
σ : 0.54
deviance : 133.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.37 0.471 6.17 -1.6 0.52 -0.024 0.571 -3.38 -0.184 5.01 1005 18917 -- --
115.76 0.501 6.14 -1.43 0.504 0.247 0.645 -- -0.168 4.87 1008 7808 -- --
101.13 0.468 6.17 -1.61 0.534 -0.0404 -- -3.38 -0.191 5.23 1005 18965 -- --
116.2 0.502 6.14 -1.46 0.524 0.264 -- -- -0.17 5.36 1008 7870 -- --
115.61 0.501 6.18 -1.58 -- -0.0581 -- -3.43 -0.174 -- 1005 18933 -- --
117.99 0.509 6.14 -1.39 0.53 -- 0.528 -- -0.172 5.09 -- -- -- --
118.63 0.51 6.14 -1.39 0.536 -- -- -- -0.175 5.32 -- -- -- --
130.61 0.532 6.15 -1.47 -- 0.289 -- -- -0.163 -- 1008 7957 -- --
141.95 0.555 6.06 -- 0.509 -0.8 -- -- 0.199 5.39 1009 47520 -- --
133.62 0.54 6.15 -1.37 -- -- -- -- -0.161 -- -- -- -- --
169.3 0.609 6.1 -- 0.513 -- -- -- -0.0203 5.42 -- -- -- --
150.83 0.572 6.06 -- -- -0.903 -- -- 0.228 -- 1013 47520 -- --
183 0.631 6.11 -- -- -- -- -- -0.00956 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.92 humidity 80 14400 > th dose independent rect. 23 1
2 102.38 wind 1 43200 > th dose dependent rect. 13 1
3 102.51 wind 9 43200 < th dose dependent rect. 13 1
5 102.88 wind 1 43200 < th dose independent rect. 9 3
6 103.19 wind 1 43200 < th dose dependent rect. 9 3
7 103.43 wind 1 43200 > th dose independent rect. 9 3
8 103.52 wind 7 14400 > th dose independent rect. 14 2
9 103.53 wind 7 14400 > th dose dependent rect. 13 2
15 103.71 wind 5 43200 < th dose independent rect. 13 2
16 103.71 wind 1 43200 < th dose dependent rect. 2 1
29 104.01 atmosphere 1005 4320 < th dose independent rect. 9 2
30 104.02 atmosphere 1005 4320 > th dose independent rect. 9 1
50 104.39 humidity 80 14400 > th dose independent rect. 20 11
58 104.55 wind 5 14400 > th dose dependent rect. 11 5
66 104.66 atmosphere 1005 4320 < th dose independent rect. 7 4
90 104.83 humidity 80 14400 < th dose dependent rect. 20 12
108 104.92 humidity 80 14400 < th dose dependent rect. 20 4
111 104.94 humidity 90 14400 < th dose independent rect. 1 5
116 104.96 wind 1 43200 < th dose independent rect. 2 1
134 105.04 atmosphere 995 43200 < th dose independent rect. 16 17
140 105.09 humidity 90 14400 > th dose independent rect. 1 5
146 105.10 humidity 80 14400 < th dose independent rect. 20 12
147 105.10 atmosphere 995 43200 > th dose independent rect. 16 17
157 105.13 humidity 90 14400 < th dose independent rect. 1 3
161 105.14 humidity 80 14400 < th dose independent rect. 22 2
248 105.41 wind 7 14400 > th dose independent rect. 5 11
262 105.44 atmosphere 1005 1440 < th dose dependent rect. 11 1
265 105.44 atmosphere 995 43200 < th dose dependent rect. 14 12
267 105.46 humidity 80 43200 > th dose independent rect. 20 3
273 105.47 humidity 80 14400 < th dose independent rect. 20 8
277 105.48 humidity 90 14400 > th dose independent rect. 1 3
320 105.59 atmosphere 995 43200 > th dose independent sin 12 NA
326 105.60 atmosphere 995 43200 < th dose independent sin 13 NA
327 105.60 humidity 80 14400 < th dose independent rect. 20 6
389 105.75 wind 1 43200 > th dose independent rect. 2 1
412 105.81 wind 7 14400 < th dose independent rect. 5 11
414 105.81 wind 9 14400 > th dose dependent rect. 18 21
434 105.86 wind 1 43200 > th dose independent rect. 7 1
453 105.90 atmosphere 1005 4320 < th dose independent sin 4 NA
515 106.02 wind 7 14400 > th dose dependent rect. 6 10
536 106.06 wind 9 14400 > th dose dependent rect. 13 8
543 106.08 atmosphere 1005 4320 > th dose independent sin 4 NA
596 106.18 atmosphere 995 43200 < th dose dependent rect. 15 10
667 106.31 wind 1 43200 < th dose dependent rect. 11 1
701 106.37 atmosphere 995 43200 > th dose independent rect. 17 10
706 106.37 atmosphere 995 43200 < th dose dependent rect. 17 6
708 106.37 atmosphere 1005 30 < th dose dependent rect. 7 11
709 106.37 wind 9 14400 > th dose dependent rect. 20 19
714 106.38 atmosphere 995 43200 < th dose dependent rect. 16 8
718 106.39 radiation 1 4320 < th dose independent rect. 18 9
727 106.40 radiation 1 4320 < th dose independent rect. 18 7
729 106.40 atmosphere 995 43200 < th dose independent rect. 17 10
756 106.43 atmosphere 995 43200 < th dose independent rect. 18 5
776 106.44 atmosphere 995 43200 < th dose dependent rect. 18 4
783 106.46 atmosphere 995 43200 > th dose independent rect. 18 5
785 106.46 wind 3 43200 > th dose independent rect. 9 7
808 106.50 radiation 1 4320 < th dose independent rect. 18 3
857 106.56 wind 1 43200 < th dose independent rect. 7 1
913 106.61 wind 9 14400 > th dose dependent rect. 13 12
922 106.63 humidity 80 14400 < th dose dependent rect. 1 7
966 106.69 atmosphere 995 43200 < th dose independent rect. 13 17