BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0236400 Os12g0236400|D10334
(241 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63400.1 | chr5:25393274-25394817 REVERSE LENGTH=247 417 e-117
AT5G50370.1 | chr5:20509382-20510631 REVERSE LENGTH=249 392 e-110
AT5G35170.1 | chr5:13419278-13423482 FORWARD LENGTH=589 139 2e-33
AT5G47840.1 | chr5:19375488-19378058 FORWARD LENGTH=284 129 2e-30
AT2G37250.1 | chr2:15641991-15643318 FORWARD LENGTH=285 106 9e-24
AT2G39270.1 | chr2:16399983-16401408 FORWARD LENGTH=296 100 1e-21
AT5G26667.1 | chr5:9276659-9277788 FORWARD LENGTH=209 84 7e-17
AT3G60180.2 | chr3:22242781-22244015 REVERSE LENGTH=205 82 3e-16
AT4G25280.1 | chr4:12939068-12940723 REVERSE LENGTH=250 80 1e-15
AT3G01820.1 | chr3:293981-295357 REVERSE LENGTH=264 58 4e-09
>AT5G63400.1 | chr5:25393274-25394817 REVERSE LENGTH=247
Length = 246
Score = 417 bits (1072), Expect = e-117, Method: Compositional matrix adjust.
Identities = 194/240 (80%), Positives = 221/240 (92%)
Query: 2 AANLEDVPSMELMTELLRRMKCSSKPDKRVILVGPPGCGKGTQSPLIKDEFCLCHLATGD 61
AA+LEDV +++LM+ELLRR+KCS KPDKR+I +GPPG GKGTQSP++KDE+CLCHL+TGD
Sbjct: 7 AADLEDVQTVDLMSELLRRLKCSQKPDKRLIFIGPPGSGKGTQSPVVKDEYCLCHLSTGD 66
Query: 62 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSCQKGFILDGFPRTVVQA 121
MLRAAVA+KTPLG+KAKEAM+KGELVSDDLVVGIIDEAM K CQKGFILDGFPRTV QA
Sbjct: 67 MLRAAVASKTPLGVKAKEAMEKGELVSDDLVVGIIDEAMNKPKCQKGFILDGFPRTVTQA 126
Query: 122 QKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDVT 181
+KLDEML ++GT+IDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPG+DD+T
Sbjct: 127 EKLDEMLKRRGTEIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGVDDIT 186
Query: 182 GEPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKALS 241
GEPLIQRKDD A VLKSRL AFH QT+PVIDYY KK ++ N+ AEK P+EVT EV+KALS
Sbjct: 187 GEPLIQRKDDNADVLKSRLAAFHSQTQPVIDYYAKKAVLTNIQAEKAPQEVTSEVKKALS 246
>AT5G50370.1 | chr5:20509382-20510631 REVERSE LENGTH=249
Length = 248
Score = 392 bits (1007), Expect = e-110, Method: Compositional matrix adjust.
Identities = 179/230 (77%), Positives = 210/230 (91%)
Query: 2 AANLEDVPSMELMTELLRRMKCSSKPDKRVILVGPPGCGKGTQSPLIKDEFCLCHLATGD 61
+ ++ED+ +++LM+ELLRRMKC+SKPDKR++ +GPPG GKGTQSP+IKDEFCLCHL+TGD
Sbjct: 8 SVDMEDIQTVDLMSELLRRMKCASKPDKRLVFIGPPGSGKGTQSPVIKDEFCLCHLSTGD 67
Query: 62 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSCQKGFILDGFPRTVVQA 121
MLRAAVAAKTPLG+KAKEAMDKGELVSDDLVVGI+DEAM + CQKGFILDGFPRTV QA
Sbjct: 68 MLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIMDEAMNRPKCQKGFILDGFPRTVTQA 127
Query: 122 QKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDVT 181
+KLDEML ++G +IDKVLNFAIDD++LEERITGRWIHPSSGRSYHTKFAPPK PG+DD+T
Sbjct: 128 EKLDEMLNRRGAQIDKVLNFAIDDSVLEERITGRWIHPSSGRSYHTKFAPPKVPGVDDLT 187
Query: 182 GEPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKE 231
GEPLIQRKDD A VL+SRL+AFH QT+PVIDYY KK + N+ AEK P+E
Sbjct: 188 GEPLIQRKDDNADVLRSRLDAFHKQTQPVIDYYAKKENLVNIPAEKAPEE 237
>AT5G35170.1 | chr5:13419278-13423482 FORWARD LENGTH=589
Length = 588
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 131/223 (58%), Gaps = 11/223 (4%)
Query: 20 RMKCSSKPDKRVILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKE 79
+++CS +V++ G P GKGTQ LI +F L H++TGD+LRA V++ T +G +AKE
Sbjct: 71 QIRCSINEPLKVMISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSSGTDIGKRAKE 130
Query: 80 AMDKGELVSDDLVVGIIDEAMKKTSCQK-GFILDGFPRTVVQAQKLDEMLAKQGTKIDKV 138
M+ G LV D++V+ ++ + + ++ G++LDGFPR+ QAQ LD++ K D
Sbjct: 131 FMNSGSLVPDEIVIAMVAGRLSREDAKEHGWLLDGFPRSFAQAQSLDKL----NVKPDIF 186
Query: 139 LNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKS 198
+ + D IL +R GR + P +G+ YH K PP++ D++ L+ R DDT +K+
Sbjct: 187 ILLDVPDEILIDRCVGRRLDPVTGKIYHIKNYPPES---DEIKAR-LVTRPDDTEEKVKA 242
Query: 199 RLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKALS 241
RL+ + ++ +I Y+ ++ + A +P + V E Q LS
Sbjct: 243 RLQIYKQNSEAIISAYSD--VMVKIDANRPKEVVFEETQTLLS 283
>AT5G47840.1 | chr5:19375488-19378058 FORWARD LENGTH=284
Length = 283
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 121/213 (56%), Gaps = 11/213 (5%)
Query: 30 RVILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 89
++++ G P GKGTQ LI ++ L H++ GD+LRA +A+ + G +AKE M+KG+LV D
Sbjct: 66 KIMISGAPASGKGTQCELITHKYGLVHISAGDLLRAEIASGSENGRRAKEHMEKGQLVPD 125
Query: 90 DLVVGIIDEAMKKT-SCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAIL 148
++VV ++ + + +T S QKG++LDG+PR+ QA L G + D + + + IL
Sbjct: 126 EIVVMMVKDRLSQTDSEQKGWLLDGYPRSASQATALKGF----GFQPDLFIVLEVPEEIL 181
Query: 149 EERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTK 208
ER+ GR + P +G+ YH K++PP+T + L QR DDT K RL+ +
Sbjct: 182 IERVVGRRLDPVTGKIYHLKYSPPET----EEIAVRLTQRFDDTEEKAKLRLKTHNQNVS 237
Query: 209 PVIDYYTKKGIVANLHAEKPPKEVTVEVQKALS 241
V+ Y I + + +EV ++ +LS
Sbjct: 238 DVLSMYDD--ITIKIEGNRSKEEVFAQIDSSLS 268
>AT2G37250.1 | chr2:15641991-15643318 FORWARD LENGTH=285
Length = 284
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 112/200 (56%), Gaps = 18/200 (9%)
Query: 32 ILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL 91
+ +G PG GKGT + + + H+ATGD++R +A+ PL K E +++G+LVSD++
Sbjct: 55 VFLGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVNQGKLVSDEI 114
Query: 92 VVGIIDEAMK--KTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILE 149
+V ++ + ++ + + GFILDGFPRT+ QA+ L ++ T ID V+N + + +L
Sbjct: 115 IVDLLSKRLEAGEARGESGFILDGFPRTMRQAEILGDV-----TDIDLVVNLKLPEEVLV 169
Query: 150 ERITGRWIHPSSGRSYHTKFAPPKTP-GLDDVTGEP----------LIQRKDDTAAVLKS 198
++ GR G+ ++ K G ++ +P L+ R DDT V+K+
Sbjct: 170 DKCLGRRTCSQCGKGFNVAHINLKGENGRPGISMDPLLPPHQCMSKLVTRADDTEEVVKA 229
Query: 199 RLEAFHVQTKPVIDYYTKKG 218
RL ++ ++P+ +YY KG
Sbjct: 230 RLRIYNETSQPLEEYYRTKG 249
>AT2G39270.1 | chr2:16399983-16401408 FORWARD LENGTH=296
Length = 295
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 106/202 (52%), Gaps = 22/202 (10%)
Query: 32 ILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL 91
+ +G PG GKGT + + + H+ATGD++R +++ L + KE ++ G+LV D+
Sbjct: 68 VFLGCPGVGKGTYASRLSSLLGVPHIATGDLVREELSSSGLLSSQLKELVNHGKLVPDEF 127
Query: 92 VVGIIDEAMK--KTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILE 149
++ ++ + ++ K + G+ILDGFPRTV QA+ L+ + T ID V+N + + L
Sbjct: 128 IISLLSKRLQAGKDKGESGYILDGFPRTVTQAEILEGV-----TNIDLVINLKLREEALL 182
Query: 150 ERITGRWIHPSSGRSYHTKFAPPKTPGLDDV-------------TGEPLIQRKDDTAAVL 196
+ GR I G +Y+ A G DD LI R DDT V+
Sbjct: 183 AKCLGRRICSECGGNYNV--ACIDIKGDDDTPRMYMPPLLPPPNCESKLISRADDTEEVV 240
Query: 197 KSRLEAFHVQTKPVIDYYTKKG 218
K RL ++ T+PV ++Y K+G
Sbjct: 241 KERLRIYNKMTQPVEEFYKKRG 262
>AT5G26667.1 | chr5:9276659-9277788 FORWARD LENGTH=209
Length = 208
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 104/220 (47%), Gaps = 37/220 (16%)
Query: 24 SSKPDKRVILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDK 83
S K + ++G PG GKGTQ I + + HL+ GD+LRA + + + G + + +
Sbjct: 10 SGKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKE 69
Query: 84 GELVSDDLVVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDK--VLNF 141
G++V ++ + ++ +A+++ K F++DGFPR +++ T+I+ VL F
Sbjct: 70 GKIVPSEVTIKLLQKAIQENGNDK-FLIDGFPRNEENRAAFEKV-----TEIEPKFVLFF 123
Query: 142 AIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLE 201
+ +E+R+ GR + G R+DD ++ R +
Sbjct: 124 DCPEEEMEKRLLGR----NQG-------------------------REDDNIETIRKRFK 154
Query: 202 AFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKALS 241
F + PVI YY KG V ++A KP + V EV+ S
Sbjct: 155 VFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVKAIFS 194
>AT3G60180.2 | chr3:22242781-22244015 REVERSE LENGTH=205
Length = 204
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 33/202 (16%)
Query: 31 VILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 90
V ++G PG GKGTQ + F H + GD+LRA + + + G + + +G +V +
Sbjct: 24 VFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEIKSGSEFGAMIQSMIAEGRIVPSE 83
Query: 91 LVVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILEE 150
+ V ++ +AM+++ K F++DGFPR + + + E +A+ VL F + LE
Sbjct: 84 ITVKLLCKAMEESGNDK-FLIDGFPRN-EENRNVFENVARIEPAF--VLFFDCPEEELER 139
Query: 151 RITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTKPV 210
RI R + G R+DD +K R + F T P+
Sbjct: 140 RIMSR----NQG-------------------------REDDNIETIKKRFKVFVESTLPI 170
Query: 211 IDYYTKKGIVANLHAEKPPKEV 232
I YY KG + ++A K +EV
Sbjct: 171 ISYYESKGKLRKINAAKSSEEV 192
>AT4G25280.1 | chr4:12939068-12940723 REVERSE LENGTH=250
Length = 249
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 33/194 (17%)
Query: 32 ILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL 91
++G PG GKGTQ I + F L HL+ GD+LR +A T G + G++V ++
Sbjct: 47 FVLGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLIKDGKIVPSEV 106
Query: 92 VVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILEER 151
V +I + ++ + +K F++DGFPRT + ++ D VL F EE
Sbjct: 107 TVKLIQKELESSDNRK-FLIDGFPRTEENRVAFERIIRADP---DVVLFFDCP----EEE 158
Query: 152 ITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTKPVI 211
+ R ++ + GR DD +K RL+ F+ +PVI
Sbjct: 159 MVKRVLNRNQGRI-------------------------DDNITTMKKRLKIFNALNRPVI 193
Query: 212 DYYTKKGIVANLHA 225
DYY KG + ++A
Sbjct: 194 DYYKNKGKLYTINA 207
>AT3G01820.1 | chr3:293981-295357 REVERSE LENGTH=264
Length = 263
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 99/213 (46%), Gaps = 33/213 (15%)
Query: 25 SKPDKRV--ILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMD 82
S PD+ V +L+G PG + + + + H++ G ++R + ++ L + A++
Sbjct: 57 SGPDRGVQWVLMGAPGAWRHVFAERLSKLLEVPHISMGSLVRQELNPRSSLYKEIASAVN 116
Query: 83 KGELVSDDLVVGIIDEAMKKTSC--QKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLN 140
+ +LV +V ++ + +++ + GFIL G PRT QA+ LD++ +ID V+N
Sbjct: 117 ERKLVPKSVVFALLSKRLEEGYARGETGFILHGIPRTRFQAETLDQI-----AQIDLVVN 171
Query: 141 FAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPL-IQRKDDTAAVLKSR 199
+ L R + A P+ L + P+ I + ++ V
Sbjct: 172 LKCSEDHLVNR---------------NETALPQQEFLGSMLHSPVAINARRESVGVYAQE 216
Query: 200 LEAFHVQTKPVIDYY--------TKKGIVANLH 224
+E ++ + + ++D++ T +G++A LH
Sbjct: 217 VEEYYRKQRKLLDFHVGGATSADTWQGLLAALH 249
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,489,115
Number of extensions: 228976
Number of successful extensions: 715
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 702
Number of HSP's successfully gapped: 10
Length of query: 241
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 145
Effective length of database: 8,474,633
Effective search space: 1228821785
Effective search space used: 1228821785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)