BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0236400 Os12g0236400|D10334
(241 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP trans... 493 e-140
Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP trans... 456 e-129
Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2... 132 3e-31
Os03g0130400 Adenylate kinase, subfamily protein 117 6e-27
Os08g0288200 Adenylate kinase family protein 106 2e-23
Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) ... 92 5e-19
Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48) 84 9e-17
Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48) 82 5e-16
Os08g0118900 Adenylate kinase family protein 79 4e-15
>Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 241
Score = 493 bits (1269), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/241 (100%), Positives = 241/241 (100%)
Query: 1 MAANLEDVPSMELMTELLRRMKCSSKPDKRVILVGPPGCGKGTQSPLIKDEFCLCHLATG 60
MAANLEDVPSMELMTELLRRMKCSSKPDKRVILVGPPGCGKGTQSPLIKDEFCLCHLATG
Sbjct: 1 MAANLEDVPSMELMTELLRRMKCSSKPDKRVILVGPPGCGKGTQSPLIKDEFCLCHLATG 60
Query: 61 DMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSCQKGFILDGFPRTVVQ 120
DMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSCQKGFILDGFPRTVVQ
Sbjct: 61 DMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSCQKGFILDGFPRTVVQ 120
Query: 121 AQKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDV 180
AQKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDV
Sbjct: 121 AQKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDV 180
Query: 181 TGEPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKAL 240
TGEPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKAL
Sbjct: 181 TGEPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKAL 240
Query: 241 S 241
S
Sbjct: 241 S 241
>Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 243
Score = 456 bits (1172), Expect = e-129, Method: Compositional matrix adjust.
Identities = 218/240 (90%), Positives = 230/240 (95%)
Query: 2 AANLEDVPSMELMTELLRRMKCSSKPDKRVILVGPPGCGKGTQSPLIKDEFCLCHLATGD 61
AANLEDVPSM+LM ELLRRMKCSSKPDKR+ILVGPPG GKGTQSP+IKDE+CLCHLATGD
Sbjct: 4 AANLEDVPSMDLMNELLRRMKCSSKPDKRLILVGPPGSGKGTQSPIIKDEYCLCHLATGD 63
Query: 62 MLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSCQKGFILDGFPRTVVQA 121
MLRAAVAAKTPLG+KAKEAMDKGELVSDDLVVGIIDEAMKK SCQKGFILDGFPRTVVQA
Sbjct: 64 MLRAAVAAKTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQA 123
Query: 122 QKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPKTPGLDDVT 181
QKLDEML K+GTK+DKVLNFAIDD+ILEERITGRWIHPSSGRSYHTKFAPPK PG+DDVT
Sbjct: 124 QKLDEMLEKKGTKVDKVLNFAIDDSILEERITGRWIHPSSGRSYHTKFAPPKVPGVDDVT 183
Query: 182 GEPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKALS 241
GEPLIQRKDDTA VLKSRLEAFH QT+PVIDYY+KK +VANLHAEKPPKEVT EVQK LS
Sbjct: 184 GEPLIQRKDDTAEVLKSRLEAFHKQTEPVIDYYSKKALVANLHAEKPPKEVTAEVQKVLS 243
>Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP
transphosphorylase)
Length = 290
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 124/213 (58%), Gaps = 11/213 (5%)
Query: 30 RVILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 89
+V++ G P GKGTQ LIK ++ L H++ GD+LRA +AA + G +AKE M+KG+LV D
Sbjct: 75 KVMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 134
Query: 90 DLVVGIIDEAMKKTSCQ-KGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAIL 148
++VV ++ E + + Q KG++LDG+PR+ QA L+ + + D + + D +L
Sbjct: 135 EIVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETL----NIRPDIFILLDVPDELL 190
Query: 149 EERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTK 208
ER+ GR + P +G+ YH K++PP+ ++ L QR DDT +K RL+ + +
Sbjct: 191 VERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLQTHYQNVE 246
Query: 209 PVIDYYTKKGIVANLHAEKPPKEVTVEVQKALS 241
++ Y + ++ + + +V E+ K L+
Sbjct: 247 SLLSIY--EDVIVEVKGDALVDDVFAEIDKQLT 277
>Os03g0130400 Adenylate kinase, subfamily protein
Length = 293
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 121/212 (57%), Gaps = 18/212 (8%)
Query: 20 RMKCSSKPDKRVILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKE 79
R + + + + + + +G PG GKGT + + + H+ATGD++R +A+ PL ++ E
Sbjct: 52 RQRVAEERNVQWVFLGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAE 111
Query: 80 AMDKGELVSDDLVVGIIDEAMKKTSCQ--KGFILDGFPRTVVQAQKLDEMLAKQGTKIDK 137
+++G+LVSD++++ ++ + +KK Q GFILDGFPRTV QA+ LD + T ID
Sbjct: 112 IVNQGKLVSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGV-----TDIDM 166
Query: 138 VLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPK-TPGLDDVTGEP----------LI 186
V+N + + +L E+ GR I G++++ K GL + P LI
Sbjct: 167 VVNLKLREDVLVEKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLI 226
Query: 187 QRKDDTAAVLKSRLEAFHVQTKPVIDYYTKKG 218
R DDT V+++RL+ ++ ++PV +Y ++G
Sbjct: 227 TRADDTEEVVRNRLQIYNDMSQPVEGFYRQQG 258
>Os08g0288200 Adenylate kinase family protein
Length = 493
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 103/187 (55%), Gaps = 11/187 (5%)
Query: 55 CHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKTSC-QKGFILDG 113
H++TGD+LRA V++ T +G KAKE MD G LV D +V ++ + + ++G++LDG
Sbjct: 1 VHISTGDLLRAEVSSGTEIGKKAKEYMDNGMLVPDQVVTDMVVSRLSQPDVRERGWLLDG 60
Query: 114 FPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILEERITGRWIHPSSGRSYHTKFAPPK 173
+PR+ QAQ L+ M + D + + D IL +R GR + P +G+ YH K PP+
Sbjct: 61 YPRSYAQAQSLESMKIRP----DIFIVLEVPDDILIDRCVGRRLDPETGKIYHIKNFPPE 116
Query: 174 TPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTKPVIDYYTK--KGIVANLHAEKPPKE 231
D+V+ L+ R DDT +KSRL+ + ++ VI Y+ I N E E
Sbjct: 117 N---DEVSAR-LVTRSDDTFEKVKSRLDTYKQNSEAVIPTYSDLLNQIDGNRQVEVVFNE 172
Query: 232 VTVEVQK 238
+ +QK
Sbjct: 173 IDSLLQK 179
>Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
Length = 243
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 33/207 (15%)
Query: 31 VILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 90
V ++G PG GKGTQ I +F HL+ GD+LR T G K M++G+LVS D
Sbjct: 22 VFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGKLVSSD 81
Query: 91 LVVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILEE 150
L+V ++ +AM+++ K F++DGFPR + ++ I+ ID + +E
Sbjct: 82 LIVKLLFKAMRESGNDK-FLVDGFPRNEENRHAYENII-----HIEPEFLLFIDCS--KE 133
Query: 151 RITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTKPV 210
+ R ++ + GR DD ++ R + F QT PV
Sbjct: 134 EMERRILNRNQGRD-------------------------DDNIDTIRRRFDVFQQQTLPV 168
Query: 211 IDYYTKKGIVANLHAEKPPKEVTVEVQ 237
I YY K+G + + + EV +V+
Sbjct: 169 IQYYEKRGKLRKVDGNRQVDEVFEDVK 195
>Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 214
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 37/213 (17%)
Query: 31 VILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 90
V ++G PG GKGTQ I + F HL+ GD+LRA + + + G + + +G++V +
Sbjct: 30 VFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSE 89
Query: 91 LVVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDK--VLNFAIDDAIL 148
+ + ++ EAM K+ K F++DGFPR + + TKI VL F + +
Sbjct: 90 VTIKLLQEAMIKSGNDK-FLIDGFPRNEENRAAFENV-----TKITPAFVLFFDCSEEEM 143
Query: 149 EERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTK 208
E R+ GR + GR DD ++ R + F +
Sbjct: 144 ERRLLGR----NQGRV-------------------------DDNIETIRKRFKVFVESSL 174
Query: 209 PVIDYYTKKGIVANLHAEKPPKEVTVEVQKALS 241
PVI+YY K V + A KP EV +V+ +
Sbjct: 175 PVIEYYNAKDKVKKIDAAKPIPEVFEDVKAIFA 207
>Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48)
Length = 210
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 37/213 (17%)
Query: 31 VILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 90
V ++G PG GKGTQ I + F HL+ GD+LRA + + + G + + +G++V +
Sbjct: 27 VFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSE 86
Query: 91 LVVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDK--VLNFAIDDAIL 148
+ + ++ +AM K K F++DGFPR + + TKI VL F + +
Sbjct: 87 VTIKLLQDAMIKNENDK-FLIDGFPRNEENRAAFENV-----TKISPAFVLFFDCSEEEM 140
Query: 149 EERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTK 208
E R+ GR + GR DD ++ R + F +
Sbjct: 141 ERRLLGR----NQGRV-------------------------DDNIETIRKRFKVFVESSL 171
Query: 209 PVIDYYTKKGIVANLHAEKPPKEVTVEVQKALS 241
PVI++Y K V + A KP EV +V+ +
Sbjct: 172 PVIEHYNAKNKVKKIDAAKPISEVFEDVKAIFA 204
>Os08g0118900 Adenylate kinase family protein
Length = 299
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 19/219 (8%)
Query: 32 ILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL 91
+++G PG K + + + + +++ G ++R ++ + L K ++++G+LV +D+
Sbjct: 74 VVMGRPGPQKHAHAARLAEVLAVPYISMGTLVRQELSPASSLYKKIANSVNEGKLVPEDI 133
Query: 92 VVGIIDEAMKK--TSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILE 149
+ G++ + +++ + GFILDG PRT +QA+ LDE++ ID VLNF D
Sbjct: 134 IFGLLTKRLEEGYNKGETGFILDGIPRTHMQAEILDEIV-----DIDLVLNFKCADNCFM 188
Query: 150 ERITGRWIHPSSGR--SYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVL---KSRLE--- 201
+R G I P G+ + + + P L T +Q AAVL SR+E
Sbjct: 189 KRRFGGDICPHCGQLFDFSKTASSDRNPSLGSCTWPSQVQH----AAVLGLEDSRMEKMR 244
Query: 202 AFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKAL 240
A+ QTK + DYY K+ + L P E + AL
Sbjct: 245 AYAEQTKLLEDYYRKQRKLMELKTSARPGETWQGLVAAL 283
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,717,141
Number of extensions: 364003
Number of successful extensions: 1026
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 1016
Number of HSP's successfully gapped: 9
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)