Os02g0778400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to UMP/CMP kinase a (EC 2.7.1.48).
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Os02g0778400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to UMP/CMP kinase a (EC 2.7.1.48).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.6 | 0.464 | 10.5 | -1.3 | 0.608 | -0.35 | -0.534 | -3.65 | -0.0882 | 6.04 | 9.888 | 8 | -- | -- |
| 100.04 | 0.469 | 10.4 | -0.744 | 0.491 | -0.879 | -0.759 | -- | 0.0396 | 7.5 | 25.6 | 4 | -- | -- |
| 98.27 | 0.462 | 10.5 | -1.29 | 0.612 | -0.319 | -- | -3.48 | -0.0849 | 5.96 | 9.669 | 7 | -- | -- |
| 101.21 | 0.469 | 10.4 | -0.775 | 0.507 | -0.744 | -- | -- | 0.0668 | 6.93 | 24.64 | 4 | -- | -- |
| 114.72 | 0.499 | 10.5 | -1.21 | -- | -0.727 | -- | -3.59 | -0.0204 | -- | 14.24 | 77 | -- | -- |
| 109.59 | 0.491 | 10.5 | -0.89 | 0.698 | -- | 0.241 | -- | -0.0061 | 5.34 | -- | -- | -- | -- |
| 109.7 | 0.49 | 10.5 | -0.889 | 0.7 | -- | -- | -- | -0.00699 | 5.46 | -- | -- | -- | -- |
| 113 | 0.495 | 10.5 | -0.742 | -- | -0.959 | -- | -- | 0.0941 | -- | 24.22 | 80 | -- | -- |
| 116.22 | 0.502 | 10.4 | -- | 0.459 | -0.943 | -- | -- | 0.182 | 7.59 | 24.32 | 13 | -- | -- |
| 135.22 | 0.543 | 10.5 | -0.866 | -- | -- | -- | -- | 0.0102 | -- | -- | -- | -- | -- |
| 130.54 | 0.534 | 10.4 | -- | 0.686 | -- | -- | -- | 0.092 | 5.52 | -- | -- | -- | -- |
| 126.3 | 0.523 | 10.4 | -- | -- | -1.03 | -- | -- | 0.197 | -- | 24.2 | 80 | -- | -- |
| 154.99 | 0.581 | 10.4 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.61 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 6 | 85.90 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 13 | 86.46 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 25 | 87.18 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 11 |
| 43 | 87.98 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 58 | 88.43 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 73 | 88.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 121 | 89.44 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 123 | 89.48 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 6 |
| 129 | 89.57 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 137 | 89.68 | temperature | 25 | 10 | > th | dose dependent | sin | 4 | NA |
| 159 | 89.86 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 15 |
| 161 | 89.88 | temperature | 25 | 90 | > th | dose independent | sin | 3 | NA |
| 171 | 89.93 | temperature | 20 | 30 | > th | dose dependent | sin | 2 | NA |
| 219 | 90.35 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 302 | 91.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 12 |
| 326 | 91.24 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 349 | 91.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 425 | 91.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 451 | 91.88 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 19 |
| 494 | 92.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 639 | 92.77 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 14 |
| 701 | 92.99 | wind | 5 | 270 | < th | dose independent | rect. | 6 | 8 |
| 706 | 93.01 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 15 |
| 794 | 93.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 803 | 93.39 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 810 | 93.42 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 19 |
| 863 | 93.58 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 19 |
| 864 | 93.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 865 | 93.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 877 | 93.61 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 10 |
| 953 | 93.85 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 987 | 93.93 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 7 |