BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0778400 Os02g0778400|AK103372
(214 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48) 401 e-112
Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48) 363 e-101
Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) ... 251 4e-67
Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2... 103 7e-23
Os06g0203500 Similar to UMP/CMP kinase a (EC 2.7.1.48) 92 3e-19
AK119750 80 9e-16
Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP trans... 79 2e-15
Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP trans... 76 2e-14
Os03g0130400 Adenylate kinase, subfamily protein 70 1e-12
Os04g0105500 Similar to Kluyveromyces lactis strain NRRL Y-... 70 1e-12
>Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 214
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/214 (93%), Positives = 200/214 (93%)
Query: 1 MGSVVDAPTVVAGQEEVTDNMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGD 60
MGSVVDAPTVVAGQEEVTDNMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGD
Sbjct: 1 MGSVVDAPTVVAGQEEVTDNMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGD 60
Query: 61 LLRAEIKSGSENGTMIENMIKEGKIVPSEVTIKLLQEAMIKSGNDKFLIDGFPRNEENRA 120
LLRAEIKSGSENGTMIENMIKEGKIVPSEVTIKLLQEAMIKSGNDKFLIDGFPRNEENRA
Sbjct: 61 LLRAEIKSGSENGTMIENMIKEGKIVPSEVTIKLLQEAMIKSGNDKFLIDGFPRNEENRA 120
Query: 121 AFENVTKITPAFVLFFDCSEEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEYY 180
AFENVTKITPAFVLFFDCSEEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEYY
Sbjct: 121 AFENVTKITPAFVLFFDCSEEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEYY 180
Query: 181 NAXXXXXXXXXXXXXXEVFEDVKAIFAPYAPNAA 214
NA EVFEDVKAIFAPYAPNAA
Sbjct: 181 NAKDKVKKIDAAKPIPEVFEDVKAIFAPYAPNAA 214
>Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48)
Length = 210
Score = 363 bits (933), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/210 (87%), Positives = 188/210 (89%), Gaps = 3/210 (1%)
Query: 1 MGSVVDAPTVVAGQEEVTDNMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGD 60
MGSVVDAP VV G V +NMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGF HLSAGD
Sbjct: 1 MGSVVDAPVVVEG---VAENMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGFTHLSAGD 57
Query: 61 LLRAEIKSGSENGTMIENMIKEGKIVPSEVTIKLLQEAMIKSGNDKFLIDGFPRNEENRA 120
LLRAEIKSGSENGTMIENMIKEGKIVPSEVTIKLLQ+AMIK+ NDKFLIDGFPRNEENRA
Sbjct: 58 LLRAEIKSGSENGTMIENMIKEGKIVPSEVTIKLLQDAMIKNENDKFLIDGFPRNEENRA 117
Query: 121 AFENVTKITPAFVLFFDCSEEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEYY 180
AFENVTKI+PAFVLFFDCSEEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIE+Y
Sbjct: 118 AFENVTKISPAFVLFFDCSEEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEHY 177
Query: 181 NAXXXXXXXXXXXXXXEVFEDVKAIFAPYA 210
NA EVFEDVKAIFAPYA
Sbjct: 178 NAKNKVKKIDAAKPISEVFEDVKAIFAPYA 207
>Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
Length = 243
Score = 251 bits (640), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 118/183 (64%), Positives = 143/183 (78%)
Query: 25 KKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENMIKEGK 84
KK+T+VFV+GGPGSGKGTQCA IV+ FGF HLSAGDLLR E K +E GTMI+N++ EGK
Sbjct: 17 KKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGK 76
Query: 85 IVPSEVTIKLLQEAMIKSGNDKFLIDGFPRNEENRAAFENVTKITPAFVLFFDCSEEEME 144
+V S++ +KLL +AM +SGNDKFL+DGFPRNEENR A+EN+ I P F+LF DCS+EEME
Sbjct: 77 LVSSDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHIEPEFLLFIDCSKEEME 136
Query: 145 RRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEYYNAXXXXXXXXXXXXXXEVFEDVKA 204
RR+L RNQGR DDNI+TIR+RF VF + +LPVI+YY EVFEDVKA
Sbjct: 137 RRILNRNQGRDDDNIDTIRRRFDVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDVKA 196
Query: 205 IFA 207
IFA
Sbjct: 197 IFA 199
>Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP
transphosphorylase)
Length = 290
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 30 VFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSE 89
V + G P SGKGTQC I +G +H+SAGDLLRAEI +GSENG + +++G++VP E
Sbjct: 76 VMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDE 135
Query: 90 VTIKLLQEAMIKSGNDK--FLIDGFPRNEENRAAFENVTKITPAFVLFFDCSEEEMERRL 147
+ + +++E +++ + +L+DG+PR+ A E + I P + D +E + R+
Sbjct: 136 IVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETLN-IRPDIFILLDVPDELLVERV 194
Query: 148 LGRN 151
+GR
Sbjct: 195 VGRR 198
>Os06g0203500 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 68
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 48/68 (70%)
Query: 143 MERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEYYNAXXXXXXXXXXXXXXEVFEDV 202
MERRLLGRNQGR DDNIETIRKR KVFVESSLPVIEYY + EVFEDV
Sbjct: 1 MERRLLGRNQGRSDDNIETIRKRLKVFVESSLPVIEYYESKGMVKKIDATKPAPEVFEDV 60
Query: 203 KAIFAPYA 210
KAIF A
Sbjct: 61 KAIFTHMA 68
>AK119750
Length = 1213
Score = 80.5 bits (197), Expect = 9e-16, Method: Composition-based stats.
Identities = 56/191 (29%), Positives = 102/191 (53%), Gaps = 11/191 (5%)
Query: 29 VVFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPS 88
+V+V+G PG GK T CA + + FG+ H++ G+L R+ I++GS+ ++ + G++VPS
Sbjct: 975 MVWVVGPPGVGKNTLCARLAKEFGYEHVNVGNLCRSAIRAGSDYADLLTDCALNGRVVPS 1034
Query: 89 EVTIKLLQEAM--IKSGNDKFLIDGFPRNEENRAAFENVTKITPAFVLFFDC-SEEEMER 145
V ++LLQ+AM S N+++LI FP + + FE+ T +F++ C S+ +++
Sbjct: 1035 SVVVRLLQQAMRASPSANNRWLISDFPASLDQAFDFESATGGAVSFIVHLTCASDVTLKQ 1094
Query: 146 RLLGRNQG------RVDDNIETIRKRFKVFVESSLPVI--EYYNAXXXXXXXXXXXXXXE 197
R+ R R +DN ++ KR +F E LP + ++ +
Sbjct: 1095 RIEQRTATTPAFARRSEDNPASVDKRLALFREDILPQVLSQFAQFPGKVRAVNVDGDVSD 1154
Query: 198 VFEDVKAIFAP 208
+ +KA+F P
Sbjct: 1155 AYARLKALFEP 1165
>Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 243
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 37/213 (17%)
Query: 30 VFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSE 89
+ ++G PGSGKGTQ I + + HL+ GD+LRA + + + G + + +G++V +
Sbjct: 33 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDD 92
Query: 90 VTIKLLQEAMIKSGNDK-FLIDGFPRNEENRAAFENV-----TKITPAFVLFFDCSEEEM 143
+ + ++ EAM K K F++DGFPR + + TK+ VL F + +
Sbjct: 93 LVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLEKKGTKVD--KVLNFAIDDSIL 150
Query: 144 ERRLLGR----NQGRV-------------------------DDNIETIRKRFKVFVESSL 174
E R+ GR + GR DD E ++ R + F + +
Sbjct: 151 EERITGRWIHPSSGRSYHTKFAPPKVPGVDDVTGEPLIQRKDDTAEVLKSRLEAFHKQTE 210
Query: 175 PVIEYYNAXXXXXXXXXXXXXXEVFEDVKAIFA 207
PVI+YY+ EV +V+ + +
Sbjct: 211 PVIDYYSKKALVANLHAEKPPKEVTAEVQKVLS 243
>Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 241
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 37/187 (19%)
Query: 30 VFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSE 89
V ++G PG GKGTQ I + F HL+ GD+LRA + + + G + + +G++V +
Sbjct: 31 VILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 90
Query: 90 VTIKLLQEAMIKSGNDK-FLIDGFPRNEENRAAFENV-----TKITPAFVLFFDCSEEEM 143
+ + ++ EAM K+ K F++DGFPR + + TKI VL F + +
Sbjct: 91 LVVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDK--VLNFAIDDAIL 148
Query: 144 ERRLLGR----NQGRV-------------------------DDNIETIRKRFKVFVESSL 174
E R+ GR + GR DD ++ R + F +
Sbjct: 149 EERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTK 208
Query: 175 PVIEYYN 181
PVI+YY
Sbjct: 209 PVIDYYT 215
>Os03g0130400 Adenylate kinase, subfamily protein
Length = 293
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 46/200 (23%)
Query: 24 DKKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENMIKEG 83
++ V VF LG PG GKGT + + G H++ GDL+R E+ S + ++ +G
Sbjct: 58 ERNVQWVF-LGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQG 116
Query: 84 KIVPSEVTIKLLQEAMIK---SGNDKFLIDGFPRNEENRAAFENVTKITPAFVLFFDCSE 140
K+V E+ I LL + + K G F++DGFPR + + VT I V+ E
Sbjct: 117 KLVSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVTDID--MVVNLKLRE 174
Query: 141 EEMERRLLGRN----------------QG------------------------RVDDNIE 160
+ + + LGR +G R DD E
Sbjct: 175 DVLVEKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTEE 234
Query: 161 TIRKRFKVFVESSLPVIEYY 180
+R R +++ + S PV +Y
Sbjct: 235 VVRNRLQIYNDMSQPVEGFY 254
>Os04g0105500 Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome E of
strain NRRL Y- 1140 of Kluyveromyces lactis
Length = 102
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 35/47 (74%)
Query: 23 GDKKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSG 69
G K + FVLGGPGSGKGTQC I FGF HLSAGDLLR+EI +G
Sbjct: 55 GATKPFIAFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSEISTG 101
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,725,984
Number of extensions: 279009
Number of successful extensions: 636
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 10
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)