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Os04g0105500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y- 1140 of Kluyveromyces lactis.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.18 (0.0198) R2 : 0.557
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.09 (0.049) R2dC : 0.487 R2C : 0.459
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.367 (0.0415) R2dN8 : 0.0979 R2N8 : 0.0704
σ : 0.372
deviance : 63.39
__
_____
C
peak time of C : 21.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.05 0.352 8.09 0.603 1.09 -0.368 0.373 -2.37 0.477 21.2 25.29 4234 -- --
61.59 0.366 8.2 -0.0424 1.08 -0.233 0.406 -- 0.291 21.3 118.4 32736 -- --
56.47 0.35 8.09 0.593 1.09 -0.367 -- -2.36 0.476 21.1 25.43 4048 -- --
61.87 0.366 8.18 0.0859 1.07 -0.233 -- -- 0.345 21.1 97.19 1170 -- --
122.98 0.516 8.07 0.594 -- -0.524 -- -2.69 0.455 -- 28.7 3749 -- --
62.28 0.37 8.17 0.168 1.09 -- 0.369 -- 0.385 21.2 -- -- -- --
62.76 0.371 8.17 0.155 1.09 -- -- -- 0.384 21.2 -- -- -- --
112.06 0.493 8.18 -0.118 -- -1.13 -- -- 0.209 -- 120.5 667 -- --
62.04 0.367 8.18 -- 1.08 -0.256 -- -- 0.327 21.1 168.4 1187 -- --
131.98 0.537 8.14 0.159 -- -- -- -- 0.379 -- -- -- -- --
63.39 0.372 8.18 -- 1.09 -- -- -- 0.367 21.2 -- -- -- --
112.39 0.494 8.18 -- -- -1.09 -- -- 0.228 -- 193.9 665 -- --
132.64 0.538 8.15 -- -- -- -- -- 0.361 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 52.02 temperature 10.0 43200 > th dose independent rect. 9 5
3 52.70 temperature 20.0 90 > th dose independent rect. 20 16
6 52.97 temperature 20.0 270 > th dose independent rect. 5 7
48 54.09 wind 7.0 270 < th dose independent rect. 12 17
64 54.46 atmosphere 1000.0 270 > th dose independent rect. 8 1
65 54.48 temperature 20.0 10 > th dose independent rect. 8 5
78 54.68 temperature 10.0 90 > th dose dependent rect. 6 6
88 54.79 radiation 10.0 90 > th dose independent rect. 6 6
91 54.79 wind 5.0 270 < th dose independent rect. 22 9
131 54.93 wind 9.0 270 < th dose independent rect. 9 23
132 54.93 radiation 1.0 14400 < th dose dependent rect. 15 2
139 54.97 temperature 20.0 270 > th dose independent rect. 7 2
141 54.98 precipitation 0.1 90 < th dose independent rect. 12 19
143 54.98 precipitation 0.1 90 < th dose dependent rect. 12 19
145 54.99 precipitation 0.1 270 < th dose independent rect. 12 17
146 54.99 precipitation 0.1 270 < th dose dependent rect. 12 17
150 55.02 temperature 10.0 90 > th dose dependent rect. 12 8
151 55.03 wind 9.0 90 < th dose independent rect. 7 5
152 55.03 atmosphere 1000.0 270 > th dose independent rect. 5 6
153 55.03 wind 7.0 90 < th dose independent rect. 12 7
172 55.06 temperature 10.0 90 > th dose dependent rect. 20 16
175 55.09 wind 1.0 90 > th dose independent rect. 7 5
176 55.09 wind 1.0 90 > th dose independent rect. 12 18
178 55.10 precipitation 0.1 90 < th dose independent rect. 7 5
180 55.10 temperature 15.0 90 > th dose independent rect. 12 19
181 55.10 precipitation 0.1 10 < th dose independent rect. 13 19
182 55.10 precipitation 0.1 90 < th dose dependent rect. 7 5
183 55.10 precipitation 0.1 10 < th dose dependent rect. 13 19
184 55.11 wind 1.0 10 > th dose independent rect. 8 5
189 55.12 atmosphere 1015.0 90 < th dose independent rect. 7 5
197 55.16 precipitation 0.1 270 < th dose independent rect. 5 7
198 55.16 radiation 1.0 14400 < th dose independent rect. 8 9
200 55.16 precipitation 0.1 270 < th dose dependent rect. 5 7
201 55.16 radiation 40.0 270 < th dose dependent rect. 15 10
202 55.17 wind 9.0 270 < th dose independent rect. 5 7
208 55.18 atmosphere 1015.0 270 < th dose independent rect. 5 7
209 55.18 temperature 10.0 270 > th dose independent rect. 12 17
211 55.19 radiation 1.0 270 > th dose independent rect. 8 1
214 55.21 radiation 1.0 14400 > th dose independent rect. 8 9
221 55.23 wind 1.0 43200 < th dose dependent rect. 9 1
224 55.24 radiation 10.0 10 > th dose independent rect. 8 5
228 55.25 wind 1.0 43200 > th dose independent rect. 9 1
230 55.25 wind 9.0 10 < th dose independent rect. 8 5
231 55.27 wind 1.0 43200 < th dose independent rect. 9 1
242 55.29 temperature 10.0 10 > th dose dependent rect. 20 17
243 55.30 wind 9.0 270 < th dose independent rect. 8 1
244 55.30 temperature 10.0 270 > th dose independent rect. 8 1
246 55.30 humidity 50.0 270 > th dose independent rect. 8 1
249 55.30 atmosphere 1015.0 270 < th dose independent rect. 8 1
250 55.30 precipitation 0.1 270 < th dose independent rect. 8 1
254 55.30 temperature 15.0 10 > th dose independent rect. 13 19
255 55.30 temperature 10.0 270 > th dose independent rect. 9 23
256 55.30 precipitation 0.1 270 < th dose dependent rect. 8 1
258 55.31 wind 7.0 270 < th dose independent rect. 1 15
281 55.33 temperature 10.0 10 > th dose dependent rect. 6 7
283 55.34 temperature 10.0 10 > th dose independent rect. 8 5
285 55.34 atmosphere 995.0 10 > th dose independent rect. 8 5
286 55.34 atmosphere 1015.0 10 < th dose independent rect. 8 5
287 55.34 precipitation 0.1 10 < th dose independent rect. 8 5
292 55.34 precipitation 0.1 10 < th dose dependent rect. 8 5
294 55.35 humidity 90.0 90 < th dose independent rect. 7 5
295 55.35 humidity 90.0 10 < th dose independent rect. 8 5
296 55.35 humidity 50.0 270 > th dose independent rect. 5 7
298 55.36 temperature 20.0 270 > th dose independent sin 7 NA
301 55.37 radiation 40.0 270 < th dose independent rect. 8 1
304 55.37 temperature 10.0 10 > th dose dependent rect. 13 7
310 55.39 precipitation 0.1 270 < th dose independent rect. 9 23
314 55.39 precipitation 0.1 270 < th dose dependent rect. 9 23
322 55.41 temperature 30.0 270 < th dose independent rect. 8 1
333 55.43 temperature 10.0 90 > th dose dependent rect. 12 19
335 55.45 radiation 20.0 270 < th dose independent rect. 16 9
343 55.46 wind 9.0 90 < th dose independent rect. 19 17
346 55.47 wind 7.0 270 < th dose independent rect. 12 5
356 55.48 temperature 10.0 43200 > th dose independent rect. 9 1
383 55.51 radiation 1.0 14400 < th dose independent rect. 12 4
401 55.52 humidity 50.0 90 > th dose independent rect. 7 5
405 55.52 temperature 30.0 270 < th dose independent rect. 5 7
413 55.53 atmosphere 995.0 270 > th dose independent rect. 16 9
423 55.55 atmosphere 1010.0 90 < th dose independent rect. 12 7
426 55.55 temperature 10.0 270 > th dose independent rect. 16 9
428 55.55 radiation 40.0 270 < th dose independent rect. 16 9
434 55.55 temperature 10.0 270 > th dose independent rect. 1 15
435 55.55 atmosphere 1015.0 270 < th dose independent rect. 1 15
440 55.56 radiation 1.0 14400 > th dose independent rect. 12 4
443 55.56 temperature 10.0 90 > th dose independent rect. 12 7
448 55.56 temperature 10.0 90 > th dose independent rect. 19 17
449 55.56 atmosphere 995.0 90 > th dose independent rect. 19 17
458 55.57 precipitation 0.1 270 < th dose independent rect. 1 15
459 55.57 precipitation 0.1 270 < th dose dependent rect. 1 15
466 55.58 precipitation 0.1 90 < th dose independent rect. 12 7
472 55.58 precipitation 0.1 90 < th dose dependent rect. 12 7
483 55.61 temperature 10.0 1440 > th dose independent rect. 9 5
486 55.61 atmosphere 995.0 1440 > th dose independent rect. 9 5
493 55.61 temperature 10.0 1440 > th dose independent rect. 14 19
497 55.61 radiation 30.0 4320 > th dose dependent rect. 16 1
537 55.63 humidity 70.0 43200 > th dose dependent rect. 20 7
543 55.64 humidity 70.0 43200 > th dose dependent rect. 21 5
552 55.65 temperature 20.0 270 > th dose independent rect. 5 19
556 55.66 wind 1.0 270 > th dose independent rect. 8 1
609 55.71 wind 1.0 90 > th dose independent rect. 12 7
611 55.71 humidity 70.0 43200 > th dose dependent rect. 22 1
617 55.72 radiation 10.0 1440 < th dose independent rect. 2 4
619 55.72 temperature 20.0 270 < th dose independent rect. 1 7
620 55.72 temperature 10.0 270 > th dose dependent rect. 8 1
627 55.73 radiation 1.0 270 > th dose independent rect. 11 18
638 55.74 radiation 1.0 270 > th dose independent rect. 11 8
652 55.74 humidity 70.0 43200 > th dose dependent rect. 24 1
679 55.76 atmosphere 995.0 270 > th dose dependent rect. 8 1
699 55.79 temperature 30.0 270 < th dose independent rect. 6 5
700 55.79 temperature 30.0 10 < th dose independent rect. 8 5
713 55.80 humidity 50.0 90 > th dose independent rect. 19 17
714 55.80 wind 3.0 43200 < th dose dependent rect. 16 1
726 55.81 atmosphere 1015.0 90 < th dose independent rect. 12 19
754 55.83 radiation 30.0 4320 < th dose independent rect. 16 4
758 55.83 precipitation 0.1 90 < th dose independent rect. 19 17
766 55.83 precipitation 0.1 90 < th dose dependent rect. 19 17
773 55.84 wind 9.0 270 < th dose independent rect. 16 9
786 55.84 temperature 15.0 10 > th dose dependent rect. 23 14
789 55.85 humidity 50.0 43200 < th dose independent rect. 10 2
802 55.86 atmosphere 995.0 90 > th dose independent rect. 12 19
805 55.87 radiation 40.0 4320 < th dose independent rect. 2 6
860 55.90 temperature 20.0 4320 < th dose independent rect. 9 19
873 55.91 temperature 20.0 4320 < th dose independent rect. 10 17
876 55.91 temperature 20.0 4320 < th dose independent rect. 22 21
899 55.93 radiation 1.0 270 < th dose dependent sin 6 NA
902 55.93 wind 9.0 90 < th dose dependent rect. 12 7
909 55.94 atmosphere 1015.0 10 < th dose independent rect. 13 19
918 55.94 temperature 10.0 10 > th dose dependent rect. 13 18
919 55.95 humidity 50.0 43200 > th dose independent rect. 10 2
925 55.95 temperature 20.0 4320 > th dose independent rect. 10 18
934 55.96 temperature 10.0 1440 > th dose independent rect. 7 7
937 55.96 atmosphere 995.0 1440 > th dose independent rect. 7 7
939 55.96 temperature 10.0 1440 > th dose independent rect. 14 17
947 55.96 atmosphere 995.0 10 > th dose dependent rect. 8 5
994 55.99 humidity 70.0 43200 > th dose dependent sin 12 NA
1000 55.99 temperature 25.0 4320 < th dose dependent rect. 2 16