BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0105500 Os04g0105500|AK071444
(102 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0105500 Similar to Kluyveromyces lactis strain NRRL Y-... 203 2e-53
Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48) 71 2e-13
Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48) 70 3e-13
Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) ... 66 6e-12
>Os04g0105500 Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome E of
strain NRRL Y- 1140 of Kluyveromyces lactis
Length = 102
Score = 203 bits (517), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/102 (100%), Positives = 102/102 (100%)
Query: 1 MWRRQVGALLLRHRSTPSSTLRHHLPLPVPDQTPPLASNLLLRLFTSQSGEGGDGATKPF 60
MWRRQVGALLLRHRSTPSSTLRHHLPLPVPDQTPPLASNLLLRLFTSQSGEGGDGATKPF
Sbjct: 1 MWRRQVGALLLRHRSTPSSTLRHHLPLPVPDQTPPLASNLLLRLFTSQSGEGGDGATKPF 60
Query: 61 IAFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSEISTGR 102
IAFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSEISTGR
Sbjct: 61 IAFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSEISTGR 102
>Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48)
Length = 210
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 35/47 (74%)
Query: 55 GATKPFIAFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSEISTG 101
G K + FVLGGPGSGKGTQC I FGF HLSAGDLLR+EI +G
Sbjct: 20 GDKKVTVVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSG 66
>Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 214
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 35/47 (74%)
Query: 55 GATKPFIAFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSEISTG 101
G K + FVLGGPGSGKGTQC I FGF HLSAGDLLR+EI +G
Sbjct: 23 GDKKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSG 69
>Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
Length = 243
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 30/37 (81%)
Query: 61 IAFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSE 97
I FV+GGPGSGKGTQC +I FGF HLSAGDLLR E
Sbjct: 21 IVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREE 57
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,588,535
Number of extensions: 236737
Number of successful extensions: 917
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 917
Number of HSP's successfully gapped: 4
Length of query: 102
Length of database: 17,035,801
Length adjustment: 70
Effective length of query: 32
Effective length of database: 13,380,821
Effective search space: 428186272
Effective search space used: 428186272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)