Os06g0109600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase) (UMP/CMP kinase).
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Os06g0109600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase) (UMP/CMP kinase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.97 | 0.412 | 11.1 | -2.32 | 1.82 | 0.901 | -1.59 | -2.18 | -0.732 | 16.5 | 26.7 | 1504 | -- | -- |
| 81.59 | 0.421 | 11 | -1.67 | 1.85 | 0.765 | -1.73 | -- | -0.595 | 16.5 | 25.8 | 1529 | -- | -- |
| 83.7 | 0.426 | 11.1 | -2.32 | 1.82 | 0.915 | -- | -2.12 | -0.739 | 16.6 | 26.76 | 1508 | -- | -- |
| 87.12 | 0.435 | 11 | -1.71 | 1.82 | 0.725 | -- | -- | -0.584 | 16.6 | 26.8 | 1480 | -- | -- |
| 191.56 | 0.645 | 11.1 | -1.96 | -- | 1.14 | -- | -1.76 | -0.558 | -- | 28.49 | 156 | -- | -- |
| 99.69 | 0.468 | 11 | -1.39 | 1.84 | -- | -1.69 | -- | -0.35 | 16.6 | -- | -- | -- | -- |
| 107.24 | 0.485 | 11 | -1.4 | 1.83 | -- | -- | -- | -0.358 | 16.6 | -- | -- | -- | -- |
| 159.99 | 0.589 | 11 | -1.78 | -- | 1.31 | -- | -- | -0.713 | -- | 26.6 | 277 | -- | -- |
| 153.31 | 0.577 | 10.9 | -- | 1.84 | 0.339 | -- | -- | -0.249 | 16.5 | 28.72 | 1382 | -- | -- |
| 285.3 | 0.789 | 10.9 | -1.47 | -- | -- | -- | -- | -0.406 | -- | -- | -- | -- | -- |
| 159.21 | 0.59 | 10.9 | -- | 1.86 | -- | -- | -- | -0.202 | 16.6 | -- | -- | -- | -- |
| 243.49 | 0.727 | 11 | -- | -- | 1.17 | -- | -- | -0.49 | -- | 26.58 | 274 | -- | -- |
| 342.64 | 0.864 | 10.9 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 72.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 3 | 72.80 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 4 | 73.06 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 6 | 73.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 7 |
| 7 | 73.13 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 9 | 73.22 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 10 | 73.22 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 12 |
| 13 | 73.27 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 15 | 73.29 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 16 | 73.30 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 12 |
| 20 | 73.34 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 23 | 73.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 28 | 73.39 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 30 | 73.40 | wind | 5 | 43200 | < th | dose independent | sin | 20 | NA |
| 35 | 73.45 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 67 | 73.66 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 93 | 73.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 9 |
| 94 | 73.79 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 13 |
| 99 | 73.84 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 104 | 73.87 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 9 |
| 118 | 73.92 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 180 | 74.13 | wind | 3 | 43200 | > th | dose dependent | sin | 21 | NA |
| 216 | 74.25 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 19 |
| 244 | 74.34 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 246 | 74.35 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 320 | 74.58 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 9 |
| 345 | 74.67 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 383 | 74.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 4 |
| 396 | 74.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 406 | 74.87 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 433 | 74.94 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 512 | 75.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 536 | 75.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 542 | 75.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 572 | 75.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 604 | 75.43 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 829 | 76.00 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 944 | 76.25 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 9 |
| 985 | 76.34 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 1 |