BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0109600 Os06g0109600|AK066989
(243 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) ... 441 e-124
Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48) 237 7e-63
Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48) 232 2e-61
Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2... 87 8e-18
AK119750 77 1e-14
Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP trans... 77 1e-14
Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP trans... 77 2e-14
Os03g0130400 Adenylate kinase, subfamily protein 72 4e-13
Os06g0203500 Similar to UMP/CMP kinase a (EC 2.7.1.48) 67 1e-11
Os04g0105500 Similar to Kluyveromyces lactis strain NRRL Y-... 65 4e-11
>Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
Length = 243
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/243 (94%), Positives = 229/243 (94%)
Query: 1 MAHANKNHIESFPPPGKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKY 60
MAHANKNHIESFPPPGKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKY
Sbjct: 1 MAHANKNHIESFPPPGKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKY 60
Query: 61 DTEQGTMIKNLMNEGKLVSSDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHI 120
DTEQGTMIKNLMNEGKLVSSDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHI
Sbjct: 61 DTEQGTMIKNLMNEGKLVSSDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHI 120
Query: 121 EPEFLLFIDCSKEEMERRILNRNQGXXXXXXXXXXXXXXVFQQQTLPVIQYYEKRGKLRK 180
EPEFLLFIDCSKEEMERRILNRNQG VFQQQTLPVIQYYEKRGKLRK
Sbjct: 121 EPEFLLFIDCSKEEMERRILNRNQGRDDDNIDTIRRRFDVFQQQTLPVIQYYEKRGKLRK 180
Query: 181 VDGNRQVDEVFEDVKAIFAQLNNQKIHGGQQASGLSRAQMNPLKRWFFDFFCGCFGTKEE 240
VDGNRQVDEVFEDVKAIFAQLNNQKIHGGQQASGLSRAQMNPLKRWFFDFFCGCFGTKEE
Sbjct: 181 VDGNRQVDEVFEDVKAIFAQLNNQKIHGGQQASGLSRAQMNPLKRWFFDFFCGCFGTKEE 240
Query: 241 ARN 243
ARN
Sbjct: 241 ARN 243
>Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 214
Score = 237 bits (604), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 111/183 (60%), Positives = 140/183 (76%)
Query: 17 KKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGK 76
KK+T+VFV+GGPGSGKGTQCA IV+ FGF HLSAGDLLR E K +E GTMI+N++ EGK
Sbjct: 25 KKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENMIKEGK 84
Query: 77 LVSSDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHIEPEFLLFIDCSKEEME 136
+V S++ +KLL +AM +SGNDKFL+DGFPRNEENR A+EN+ I P F+LF DCS+EEME
Sbjct: 85 IVPSEVTIKLLQEAMIKSGNDKFLIDGFPRNEENRAAFENVTKITPAFVLFFDCSEEEME 144
Query: 137 RRILNRNQGXXXXXXXXXXXXXXVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDVKA 196
RR+L RNQG VF + +LPVI+YY + K++K+D + + EVFEDVKA
Sbjct: 145 RRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEYYNAKDKVKKIDAAKPIPEVFEDVKA 204
Query: 197 IFA 199
IFA
Sbjct: 205 IFA 207
>Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48)
Length = 210
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 109/183 (59%), Positives = 139/183 (75%)
Query: 17 KKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGK 76
KK+T+VFV+GGPGSGKGTQCA IV+ FGFTHLSAGDLLR E K +E GTMI+N++ EGK
Sbjct: 22 KKVTVVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGK 81
Query: 77 LVSSDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHIEPEFLLFIDCSKEEME 136
+V S++ +KLL AM ++ NDKFL+DGFPRNEENR A+EN+ I P F+LF DCS+EEME
Sbjct: 82 IVPSEVTIKLLQDAMIKNENDKFLIDGFPRNEENRAAFENVTKISPAFVLFFDCSEEEME 141
Query: 137 RRILNRNQGXXXXXXXXXXXXXXVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDVKA 196
RR+L RNQG VF + +LPVI++Y + K++K+D + + EVFEDVKA
Sbjct: 142 RRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVFEDVKA 201
Query: 197 IFA 199
IFA
Sbjct: 202 IFA 204
>Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP
transphosphorylase)
Length = 290
Score = 87.4 bits (215), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 22 VFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGKLVSSD 81
V + G P SGKGTQC I ++G H+SAGDLLR E +E G K M +G+LV +
Sbjct: 76 VMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDE 135
Query: 82 LIV-----KLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHIEPEFLLFIDCSKEEME 136
++V +LL +E G +L+DG+PR+ A E ++I P+ + +D E +
Sbjct: 136 IVVNMVKERLLQPDAQEKG---WLLDGYPRSYSQAMALET-LNIRPDIFILLDVPDELLV 191
Query: 137 RRILNR 142
R++ R
Sbjct: 192 ERVVGR 197
>AK119750
Length = 1213
Score = 77.0 bits (188), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/197 (26%), Positives = 104/197 (52%), Gaps = 13/197 (6%)
Query: 13 PPPGKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLM 72
PP +K+ V+V+G PG GK T CA++ K+FG+ H++ G+L R + ++ ++ +
Sbjct: 969 PPAPRKM--VWVVGPPGVGKNTLCARLAKEFGYEHVNVGNLCRSAIRAGSDYADLLTDCA 1026
Query: 73 NEGKLVSSDLIVKLLFKAMRE--SGNDKFLVDGFPRNEENRHAYENIIHIEPEFLLFIDC 130
G++V S ++V+LL +AMR S N+++L+ FP + + +E+ F++ + C
Sbjct: 1027 LNGRVVPSSVVVRLLQQAMRASPSANNRWLISDFPASLDQAFDFESATGGAVSFIVHLTC 1086
Query: 131 SKE-EMERRILNRNQGXXXXXXXXXXXXXXV------FQQQTLPVI--QYYEKRGKLRKV 181
+ + +++RI R V F++ LP + Q+ + GK+R V
Sbjct: 1087 ASDVTLKQRIEQRTATTPAFARRSEDNPASVDKRLALFREDILPQVLSQFAQFPGKVRAV 1146
Query: 182 DGNRQVDEVFEDVKAIF 198
+ + V + + +KA+F
Sbjct: 1147 NVDGDVSDAYARLKALF 1163
>Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 243
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 33/211 (15%)
Query: 22 VFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGKLVSSD 81
+ ++G PGSGKGTQ I ++ HL+ GD+LR T G K M++G+LVS D
Sbjct: 33 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDD 92
Query: 82 LIVKLLFKAMRESGNDK-FLVDGFPRNEENRHAYENIIH-----IEPEFLLFIDCS--KE 133
L+V ++ +AM++ K F++DGFPR + ++ ++ ID S +E
Sbjct: 93 LVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLEKKGTKVDKVLNFAIDDSILEE 152
Query: 134 EMERRILNRNQGXXXXXXXXXXXXXXV-------------------------FQQQTLPV 168
+ R ++ + G V F +QT PV
Sbjct: 153 RITGRWIHPSSGRSYHTKFAPPKVPGVDDVTGEPLIQRKDDTAEVLKSRLEAFHKQTEPV 212
Query: 169 IQYYEKRGKLRKVDGNRQVDEVFEDVKAIFA 199
I YY K+ + + + EV +V+ + +
Sbjct: 213 IDYYSKKALVANLHAEKPPKEVTAEVQKVLS 243
>Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 241
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 22 VFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGKLVSSD 81
V ++G PG GKGTQ I +F HL+ GD+LR T G K M++G+LVS D
Sbjct: 31 VILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 90
Query: 82 LIVKLLFKAMRESGNDK-FLVDGFPRN 107
L+V ++ +AM+++ K F++DGFPR
Sbjct: 91 LVVGIIDEAMKKTSCQKGFILDGFPRT 117
>Os03g0130400 Adenylate kinase, subfamily protein
Length = 293
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 61/108 (56%), Gaps = 4/108 (3%)
Query: 17 KKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGK 76
+ + VF +G PG GKGT +++ + G H++ GDL+R+E + ++N+GK
Sbjct: 59 RNVQWVF-LGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGK 117
Query: 77 LVSSDLIVKLLFKAMR---ESGNDKFLVDGFPRNEENRHAYENIIHIE 121
LVS ++I+ LL K ++ E G F++DGFPR + + + I+
Sbjct: 118 LVSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVTDID 165
>Os06g0203500 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 68
Score = 67.0 bits (162), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 135 MERRILNRNQGXXXXXXXXXXXXXXVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDV 194
MERR+L RNQG VF + +LPVI+YYE +G ++K+D + EVFEDV
Sbjct: 1 MERRLLGRNQGRSDDNIETIRKRLKVFVESSLPVIEYYESKGMVKKIDATKPAPEVFEDV 60
Query: 195 KAIFAQL 201
KAIF +
Sbjct: 61 KAIFTHM 67
>Os04g0105500 Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome E
of strain NRRL Y- 1140 of Kluyveromyces lactis
Length = 102
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 30/37 (81%)
Query: 21 IVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREE 57
I FV+GGPGSGKGTQC +I FGF HLSAGDLLR E
Sbjct: 61 IAFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSE 97
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,305,579
Number of extensions: 326480
Number of successful extensions: 725
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 10
Length of query: 243
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 145
Effective length of database: 11,918,829
Effective search space: 1728230205
Effective search space used: 1728230205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)