Os06g0203500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to UMP/CMP kinase a (EC 2.7.1.48).
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Os06g0203500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to UMP/CMP kinase a (EC 2.7.1.48).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.78 | 0.414 | 9.01 | -0.472 | 1.25 | -3.42 | -0.113 | -0.0235 | -0.135 | 18.6 | 25.53 | 139 | -- | -- |
| 77.73 | 0.411 | 9.01 | -0.467 | 1.22 | -3.39 | -0.177 | -- | -0.135 | 18.6 | 25.65 | 148 | -- | -- |
| 77.76 | 0.411 | 9.01 | -0.477 | 1.22 | -3.41 | -- | 0.027 | -0.144 | 18.7 | 25.67 | 144 | -- | -- |
| 77.69 | 0.411 | 9.01 | -0.471 | 1.21 | -3.4 | -- | -- | -0.142 | 18.6 | 25.65 | 157 | -- | -- |
| 121.72 | 0.514 | 9.03 | -0.805 | -- | -3.86 | -- | 0.854 | -0.319 | -- | 28.21 | 256 | -- | -- |
| 246.2 | 0.736 | 8.85 | 0.374 | 1.7 | -- | -0.039 | -- | 0.574 | 17.3 | -- | -- | -- | -- |
| 246.2 | 0.735 | 8.85 | 0.374 | 1.7 | -- | -- | -- | 0.574 | 17.3 | -- | -- | -- | -- |
| 122.43 | 0.515 | 9.01 | -0.652 | -- | -3.88 | -- | -- | -0.285 | -- | 27.97 | 254 | -- | -- |
| 83.13 | 0.425 | 8.99 | -- | 1.24 | -3.21 | -- | -- | -0.0546 | 18.5 | 25.65 | 160 | -- | -- |
| 396.29 | 0.93 | 8.83 | 0.316 | -- | -- | -- | -- | 0.531 | -- | -- | -- | -- | -- |
| 249.88 | 0.739 | 8.86 | -- | 1.69 | -- | -- | -- | 0.532 | 17.4 | -- | -- | -- | -- |
| 132.63 | 0.536 | 8.99 | -- | -- | -3.66 | -- | -- | -0.166 | -- | 28.21 | 254 | -- | -- |
| 398.93 | 0.932 | 8.84 | -- | -- | -- | -- | -- | 0.496 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.63 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 2 | 80.87 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 3 | 80.93 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 4 | 81.35 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 7 | 81.67 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 8 | 81.74 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 10 | 82.17 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 14 | 82.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 19 | 84.29 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 22 | 84.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 26 | 85.07 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 55 | 86.87 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 329 | 104.10 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 393 | 107.27 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 395 | 107.28 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 446 | 110.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 452 | 110.33 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 480 | 111.36 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 662 | 118.30 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 705 | 120.08 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 711 | 120.19 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 884 | 126.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 914 | 126.63 | temperature | 15 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 947 | 127.16 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 23 |