BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0203500 Os06g0203500|AK106691
(68 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0203500 Similar to UMP/CMP kinase a (EC 2.7.1.48) 140 2e-34
Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48) 115 7e-27
Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48) 110 2e-25
Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) ... 93 4e-20
>Os06g0203500 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 68
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MERRLLGRNQGRSDDNIETIRKRLKVFVESSLPVIEYYESKGMVKKIDATKPAPEVFEDV 60
MERRLLGRNQGRSDDNIETIRKRLKVFVESSLPVIEYYESKGMVKKIDATKPAPEVFEDV
Sbjct: 1 MERRLLGRNQGRSDDNIETIRKRLKVFVESSLPVIEYYESKGMVKKIDATKPAPEVFEDV 60
Query: 61 KAIFTHMA 68
KAIFTHMA
Sbjct: 61 KAIFTHMA 68
>Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 214
Score = 115 bits (288), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/68 (83%), Positives = 58/68 (85%)
Query: 1 MERRLLGRNQGRSDDNIETIRKRLKVFVESSLPVIEYYESKGMVKKIDATKPAPEVFEDV 60
MERRLLGRNQGR DDNIETIRKR KVFVESSLPVIEYY +K VKKIDA KP PEVFEDV
Sbjct: 143 MERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEYYNAKDKVKKIDAAKPIPEVFEDV 202
Query: 61 KAIFTHMA 68
KAIF A
Sbjct: 203 KAIFAPYA 210
>Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48)
Length = 210
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/68 (80%), Positives = 57/68 (83%)
Query: 1 MERRLLGRNQGRSDDNIETIRKRLKVFVESSLPVIEYYESKGMVKKIDATKPAPEVFEDV 60
MERRLLGRNQGR DDNIETIRKR KVFVESSLPVIE+Y +K VKKIDA KP EVFEDV
Sbjct: 140 MERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVFEDV 199
Query: 61 KAIFTHMA 68
KAIF A
Sbjct: 200 KAIFAPYA 207
>Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
Length = 243
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 52/67 (77%)
Query: 1 MERRLLGRNQGRSDDNIETIRKRLKVFVESSLPVIEYYESKGMVKKIDATKPAPEVFEDV 60
MERR+L RNQGR DDNI+TIR+R VF + +LPVI+YYE +G ++K+D + EVFEDV
Sbjct: 135 MERRILNRNQGRDDDNIDTIRRRFDVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDV 194
Query: 61 KAIFTHM 67
KAIF +
Sbjct: 195 KAIFAQL 201
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,170,569
Number of extensions: 64428
Number of successful extensions: 146
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 4
Length of query: 68
Length of database: 17,035,801
Length adjustment: 40
Effective length of query: 28
Effective length of database: 14,947,241
Effective search space: 418522748
Effective search space used: 418522748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)