Os07g0624700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UMP/CMP kinase a (EC 2.7.1.48).
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Os07g0624700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UMP/CMP kinase a (EC 2.7.1.48).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.77 | 0.369 | 11.1 | -0.477 | 0.711 | -0.66 | -0.303 | 0.483 | -0.269 | 0.415 | 0.1671 | 27 | -- | -- |
| 61.92 | 0.366 | 11.1 | -0.459 | 0.713 | -0.661 | 0.234 | -- | -0.269 | 0.454 | 0.07794 | 27 | -- | -- |
| 61.91 | 0.366 | 11.1 | -0.459 | 0.703 | -0.661 | -- | 0.354 | -0.286 | 0.424 | 0.07707 | 29 | -- | -- |
| 62.14 | 0.367 | 11.1 | -0.459 | 0.713 | -0.661 | -- | -- | -0.269 | 0.455 | 0.07052 | 27 | -- | -- |
| 69.22 | 0.39 | 11.1 | -0.395 | -- | -0.161 | -- | 0.24 | -0.256 | -- | 0.4386 | 20 | -- | -- |
| 71.2 | 0.396 | 11.1 | -0.377 | 0.135 | -- | -0.235 | -- | -0.253 | 8.15 | -- | -- | -- | -- |
| 71.36 | 0.396 | 11.1 | -0.384 | 0.137 | -- | -- | -- | -0.253 | 7.83 | -- | -- | -- | -- |
| 68.97 | 0.387 | 11.1 | -0.397 | -- | -0.179 | -- | -- | -0.25 | -- | 0.17 | 20 | -- | -- |
| 67.87 | 0.384 | 11.1 | -- | 0.737 | -0.665 | -- | -- | -0.241 | 0.362 | 0.1568 | 26 | -- | -- |
| 72.37 | 0.398 | 11.1 | -0.382 | -- | -- | -- | -- | -0.251 | -- | -- | -- | -- | -- |
| 75.25 | 0.406 | 11.1 | -- | 0.134 | -- | -- | -- | -0.211 | 8.03 | -- | -- | -- | -- |
| 73.11 | 0.398 | 11.1 | -- | -- | -0.168 | -- | -- | -0.213 | -- | 0.17 | 16 | -- | -- |
| 76.23 | 0.408 | 11.1 | -- | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.98 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 2 | 56.42 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 5 |
| 11 | 57.21 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 16 | 57.37 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 20 | 57.48 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 13 |
| 29 | 57.81 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 48 | 58.21 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 59 | 58.41 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 148 | 59.49 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 153 | 59.54 | temperature | 25.0 | 270 | < th | dose independent | sin | 6 | NA |
| 157 | 59.58 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 175 | 59.75 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 178 | 59.77 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 198 | 59.87 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 199 | 59.87 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 208 | 59.93 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 212 | 59.95 | radiation | 1.0 | 30 | < th | dose dependent | sin | 12 | NA |
| 219 | 59.97 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 259 | 60.17 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 402 | 60.76 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 406 | 60.77 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 446 | 60.88 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 458 | 60.91 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 462 | 60.93 | radiation | 1.0 | 10 | > th | dose independent | sin | 11 | NA |
| 468 | 60.94 | temperature | 25.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 481 | 60.97 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 483 | 60.98 | radiation | 1.0 | 10 | < th | dose independent | sin | 11 | NA |
| 506 | 61.05 | temperature | 15.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 525 | 61.08 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 552 | 61.15 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 616 | 61.33 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 709 | 61.52 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 9 |
| 737 | 61.60 | radiation | 1.0 | 10 | > th | dose independent | rect. | 17 | 15 |
| 785 | 61.71 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 788 | 61.71 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 795 | 61.73 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 799 | 61.74 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 800 | 61.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 812 | 61.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 815 | 61.74 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 818 | 61.75 | temperature | 15.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 824 | 61.76 | temperature | 10.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 835 | 61.78 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 838 | 61.78 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 844 | 61.80 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 16 |
| 864 | 61.85 | temperature | 30.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 865 | 61.85 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 18 | 11 |
| 874 | 61.87 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 884 | 61.88 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 8 | 3 |
| 886 | 61.89 | wind | 5.0 | 270 | < th | dose independent | rect. | 20 | 17 |
| 930 | 61.98 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 942 | 62.00 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 13 |
| 951 | 62.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 19 |
| 956 | 62.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 978 | 62.04 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 992 | 62.06 | radiation | 1.0 | 30 | > th | dose independent | rect. | 14 | 18 |