BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0624700 Os07g0624700|AF187063
(210 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48) 395 e-110
Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48) 373 e-104
Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) ... 260 5e-70
Os06g0203500 Similar to UMP/CMP kinase a (EC 2.7.1.48) 110 6e-25
Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2... 102 2e-22
AK119750 90 1e-18
Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP trans... 86 1e-17
Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP trans... 82 2e-16
Os03g0130400 Adenylate kinase, subfamily protein 74 9e-14
Os04g0105500 Similar to Kluyveromyces lactis strain NRRL Y-... 71 6e-13
>Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48)
Length = 210
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/210 (93%), Positives = 197/210 (93%)
Query: 1 MGSXXXXXXXXXXXXXNMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLR 60
MGS NMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLR
Sbjct: 1 MGSVVDAPVVVEGVAENMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLR 60
Query: 61 AEIKSGSENGTMIENMIKEGKIVPSEVTIKLLQDAMIKNENDKFLIDGFPRNEENRAAFE 120
AEIKSGSENGTMIENMIKEGKIVPSEVTIKLLQDAMIKNENDKFLIDGFPRNEENRAAFE
Sbjct: 61 AEIKSGSENGTMIENMIKEGKIVPSEVTIKLLQDAMIKNENDKFLIDGFPRNEENRAAFE 120
Query: 121 NVTKISPAFVLFFDCSEEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEHYNAK 180
NVTKISPAFVLFFDCSEEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEHYNAK
Sbjct: 121 NVTKISPAFVLFFDCSEEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEHYNAK 180
Query: 181 NKVKKIDAAKPISEVFEDVKAIFAPYAKVE 210
NKVKKIDAAKPISEVFEDVKAIFAPYAKVE
Sbjct: 181 NKVKKIDAAKPISEVFEDVKAIFAPYAKVE 210
>Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 214
Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/191 (95%), Positives = 188/191 (98%)
Query: 17 NMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENM 76
NMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGF HLSAGDLLRAEIKSGSENGTMIENM
Sbjct: 20 NMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENM 79
Query: 77 IKEGKIVPSEVTIKLLQDAMIKNENDKFLIDGFPRNEENRAAFENVTKISPAFVLFFDCS 136
IKEGKIVPSEVTIKLLQ+AMIK+ NDKFLIDGFPRNEENRAAFENVTKI+PAFVLFFDCS
Sbjct: 80 IKEGKIVPSEVTIKLLQEAMIKSGNDKFLIDGFPRNEENRAAFENVTKITPAFVLFFDCS 139
Query: 137 EEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVF 196
EEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIE+YNAK+KVKKIDAAKPI EVF
Sbjct: 140 EEEMERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEYYNAKDKVKKIDAAKPIPEVF 199
Query: 197 EDVKAIFAPYA 207
EDVKAIFAPYA
Sbjct: 200 EDVKAIFAPYA 210
>Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
Length = 243
Score = 260 bits (664), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 119/183 (65%), Positives = 151/183 (82%)
Query: 22 KKVTVVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGK 81
KK+T+VFV+GGPGSGKGTQCA IV+ FGFTHLSAGDLLR E K +E GTMI+N++ EGK
Sbjct: 17 KKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGK 76
Query: 82 IVPSEVTIKLLQDAMIKNENDKFLIDGFPRNEENRAAFENVTKISPAFVLFFDCSEEEME 141
+V S++ +KLL AM ++ NDKFL+DGFPRNEENR A+EN+ I P F+LF DCS+EEME
Sbjct: 77 LVSSDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHIEPEFLLFIDCSKEEME 136
Query: 142 RRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVFEDVKA 201
RR+L RNQGR DDNI+TIR+RF VF + +LPVI++Y + K++K+D + + EVFEDVKA
Sbjct: 137 RRILNRNQGRDDDNIDTIRRRFDVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDVKA 196
Query: 202 IFA 204
IFA
Sbjct: 197 IFA 199
>Os06g0203500 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 68
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/68 (80%), Positives = 57/68 (83%)
Query: 140 MERRLLGRNQGRVDDNIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVFEDV 199
MERRLLGRNQGR DDNIETIRKR KVFVESSLPVIE+Y +K VKKIDA KP EVFEDV
Sbjct: 1 MERRLLGRNQGRSDDNIETIRKRLKVFVESSLPVIEYYESKGMVKKIDATKPAPEVFEDV 60
Query: 200 KAIFAPYA 207
KAIF A
Sbjct: 61 KAIFTHMA 68
>Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP
transphosphorylase)
Length = 290
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 27 VFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSE 86
V + G P SGKGTQC I +G H+SAGDLLRAEI +GSENG + +++G++VP E
Sbjct: 76 VMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDE 135
Query: 87 VTIKLLQDAMIKNENDK--FLIDGFPRNEENRAAFENVTKISPAFVLFFDCSEEEMERRL 144
+ + ++++ +++ + + +L+DG+PR+ A E + I P + D +E + R+
Sbjct: 136 IVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETLN-IRPDIFILLDVPDELLVERV 194
Query: 145 LGRN 148
+GR
Sbjct: 195 VGRR 198
>AK119750
Length = 1213
Score = 90.1 bits (222), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/191 (30%), Positives = 109/191 (57%), Gaps = 11/191 (5%)
Query: 26 VVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPS 85
+V+V+G PG GK T CA + + FG+ H++ G+L R+ I++GS+ ++ + G++VPS
Sbjct: 975 MVWVVGPPGVGKNTLCARLAKEFGYEHVNVGNLCRSAIRAGSDYADLLTDCALNGRVVPS 1034
Query: 86 EVTIKLLQDAM--IKNENDKFLIDGFPRNEENRAAFENVTKISPAFVLFFDC-SEEEMER 142
V ++LLQ AM + N+++LI FP + + FE+ T + +F++ C S+ +++
Sbjct: 1035 SVVVRLLQQAMRASPSANNRWLISDFPASLDQAFDFESATGGAVSFIVHLTCASDVTLKQ 1094
Query: 143 RLLGRNQG------RVDDNIETIRKRFKVFVESSLPVIEHYNAK--NKVKKIDAAKPISE 194
R+ R R +DN ++ KR +F E LP + A+ KV+ ++ +S+
Sbjct: 1095 RIEQRTATTPAFARRSEDNPASVDKRLALFREDILPQVLSQFAQFPGKVRAVNVDGDVSD 1154
Query: 195 VFEDVKAIFAP 205
+ +KA+F P
Sbjct: 1155 AYARLKALFEP 1165
>Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 243
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 37/213 (17%)
Query: 27 VFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSE 86
+ ++G PGSGKGTQ I + + HL+ GD+LRA + + + G + + +G++V +
Sbjct: 33 LILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSDD 92
Query: 87 VTIKLLQDAMIKNENDK-FLIDGFPRNEENRAAFENV-----TKISPAFVLFFDCSEEEM 140
+ + ++ +AM K K F++DGFPR + + TK+ VL F + +
Sbjct: 93 LVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLEKKGTKVD--KVLNFAIDDSIL 150
Query: 141 ERRLLGR----NQGRV-------------------------DDNIETIRKRFKVFVESSL 171
E R+ GR + GR DD E ++ R + F + +
Sbjct: 151 EERITGRWIHPSSGRSYHTKFAPPKVPGVDDVTGEPLIQRKDDTAEVLKSRLEAFHKQTE 210
Query: 172 PVIEHYNAKNKVKKIDAAKPISEVFEDVKAIFA 204
PVI++Y+ K V + A KP EV +V+ + +
Sbjct: 211 PVIDYYSKKALVANLHAEKPPKEVTAEVQKVLS 243
>Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 241
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 37/209 (17%)
Query: 27 VFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSE 86
V ++G PG GKGTQ I + F HL+ GD+LRA + + + G + + +G++V +
Sbjct: 31 VILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDD 90
Query: 87 VTIKLLQDAMIKNENDK-FLIDGFPRNEENRAAFENV-----TKISPAFVLFFDCSEEEM 140
+ + ++ +AM K K F++DGFPR + + TKI VL F + +
Sbjct: 91 LVVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDK--VLNFAIDDAIL 148
Query: 141 ERRLLGR----NQGRV-------------------------DDNIETIRKRFKVFVESSL 171
E R+ GR + GR DD ++ R + F +
Sbjct: 149 EERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTK 208
Query: 172 PVIEHYNAKNKVKKIDAAKPISEVFEDVK 200
PVI++Y K V + A KP EV +V+
Sbjct: 209 PVIDYYTKKGIVANLHAEKPPKEVTVEVQ 237
>Os03g0130400 Adenylate kinase, subfamily protein
Length = 293
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 46/219 (21%)
Query: 21 DKKVTVVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEG 80
++ V VF LG PG GKGT + + G H++ GDL+R E+ S + ++ +G
Sbjct: 58 ERNVQWVF-LGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQG 116
Query: 81 KIVPSEVTIKLLQDAMIKNEND---KFLIDGFPRNEENRAAFENVTKISPAFVLFFDCSE 137
K+V E+ I LL + K E F++DGFPR + + VT I V+ E
Sbjct: 117 KLVSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVTDID--MVVNLKLRE 174
Query: 138 EEMERRLLGRN----------------QG------------------------RVDDNIE 157
+ + + LGR +G R DD E
Sbjct: 175 DVLVEKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTEE 234
Query: 158 TIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVF 196
+R R +++ + S PV Y + K+ + D I E +
Sbjct: 235 VVRNRLQIYNDMSQPVEGFYRQQGKLLEFDLPGGIPESW 273
>Os04g0105500 Similar to Kluyveromyces lactis strain NRRL Y-1140 chromosome E of
strain NRRL Y- 1140 of Kluyveromyces lactis
Length = 102
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 35/47 (74%)
Query: 20 GDKKVTVVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSG 66
G K + FVLGGPGSGKGTQC I FGF HLSAGDLLR+EI +G
Sbjct: 55 GATKPFIAFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSEISTG 101
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,413,551
Number of extensions: 267210
Number of successful extensions: 697
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 10
Length of query: 210
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 114
Effective length of database: 12,023,257
Effective search space: 1370651298
Effective search space used: 1370651298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)