Os11g0312400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase).
FiT-DB / Search/ Help/ Sample detail
|
Os11g0312400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.39 | 0.246 | 11.4 | -1.1 | 0.408 | 0.491 | 0.799 | 1.39 | -0.461 | 22.1 | 1.662 | 71 | -- | -- |
| 29.19 | 0.254 | 11.4 | -1.09 | 0.376 | 0.394 | 0.168 | -- | -0.439 | 21.4 | 1.662 | 71 | -- | -- |
| 28.67 | 0.249 | 11.4 | -1.1 | 0.317 | 0.414 | -- | 1.1 | -0.454 | 21 | 20 | 70 | -- | -- |
| 29.21 | 0.252 | 11.4 | -1.1 | 0.397 | 0.431 | -- | -- | -0.455 | 21.8 | -11.77 | 35 | -- | -- |
| 30.45 | 0.257 | 11.4 | -1.06 | -- | 0.287 | -- | 0.981 | -0.454 | -- | -0.007234 | 841 | -- | -- |
| 31.32 | 0.262 | 11.4 | -1.08 | 0.256 | -- | 0.355 | -- | -0.441 | 19.2 | -- | -- | -- | -- |
| 31.64 | 0.263 | 11.4 | -1.09 | 0.256 | -- | -- | -- | -0.441 | 19.4 | -- | -- | -- | -- |
| 31.74 | 0.262 | 11.4 | -1.12 | -- | 0.305 | -- | -- | -0.478 | -- | -30.56 | 842 | -- | -- |
| 60.76 | 0.363 | 11.4 | -- | 0.4 | 0.43 | -- | -- | -0.332 | 21.6 | -6.672 | 37 | -- | -- |
| 35.13 | 0.277 | 11.4 | -1.1 | -- | -- | -- | -- | -0.445 | -- | -- | -- | -- | -- |
| 63.08 | 0.372 | 11.3 | -- | 0.267 | -- | -- | -- | -0.319 | 19.1 | -- | -- | -- | -- |
| 62.35 | 0.368 | 11.4 | -- | -- | 0.441 | -- | -- | -0.458 | -- | 0.3513 | 9412 | -- | -- |
| 66.83 | 0.382 | 11.3 | -- | -- | -- | -- | -- | -0.324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 2 | 24.94 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 4 | 24.98 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 9 | 25.39 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 13 | 25.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 14 | 25.52 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 17 | 25.56 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 23 | 25.67 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 49 | 25.90 | radiation | 10 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 53 | 25.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 59 | 25.95 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 75 | 26.04 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 18 |
| 78 | 26.06 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 17 |
| 93 | 26.12 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 19 |
| 123 | 26.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 129 | 26.26 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 16 |
| 130 | 26.26 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 149 | 26.32 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 17 |
| 150 | 26.32 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 19 |
| 181 | 26.40 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 1 | 17 |
| 221 | 26.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 224 | 26.51 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 261 | 26.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 271 | 26.60 | radiation | 40 | 30 | < th | dose dependent | rect. | 3 | 16 |
| 273 | 26.61 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 16 |
| 283 | 26.63 | radiation | 1 | 270 | > th | dose dependent | sin | 9 | NA |
| 289 | 26.63 | radiation | 40 | 10 | < th | dose dependent | rect. | 11 | 21 |
| 290 | 26.64 | radiation | 1 | 90 | > th | dose dependent | sin | 5 | NA |
| 312 | 26.68 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 331 | 26.69 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 21 |
| 333 | 26.69 | temperature | 10 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 358 | 26.72 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 360 | 26.72 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 382 | 26.76 | radiation | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 384 | 26.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 450 | 26.83 | radiation | 40 | 90 | < th | dose dependent | sin | 5 | NA |
| 465 | 26.85 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 486 | 26.86 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 15 | 15 |
| 506 | 26.89 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 509 | 26.89 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 16 |
| 526 | 26.90 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 535 | 26.92 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 20 |
| 542 | 26.93 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 11 | 19 |
| 573 | 26.96 | radiation | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 579 | 26.97 | wind | 5 | 90 | < th | dose independent | rect. | 19 | 8 |
| 597 | 26.98 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 10 | 9 |
| 612 | 26.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 668 | 27.04 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 16 |
| 716 | 27.07 | radiation | 1 | 270 | > th | dose dependent | rect. | 17 | 18 |
| 768 | 27.11 | radiation | 1 | 270 | < th | dose independent | sin | 5 | NA |
| 774 | 27.11 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 778 | 27.11 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 9 |
| 832 | 27.14 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 845 | 27.15 | temperature | 25 | 270 | > th | dose independent | sin | 8 | NA |
| 943 | 27.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 953 | 27.20 | radiation | 1 | 270 | > th | dose independent | sin | 4 | NA |
| 961 | 27.20 | radiation | 1 | 270 | < th | dose dependent | sin | 4 | NA |
| 994 | 27.22 | radiation | 1 | 270 | < th | dose independent | rect. | 1 | 15 |