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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0109300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP transphosphorylase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.0374) R2 : 0.727
β1 : -1.01 (0.136) R2dD : 0.0321 R2D : 0.0185
β2 : 4.19 (0.134) R2dC : 1.26 R2C : 0.264
β3 : 2.03 (0.122) R2dE : 0.358 R2E : -0.608
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.774 (0.0793) R2dN8 : 0.0802 R2N8 : 0.0404
σ : 0.695
deviance : 222.63
__
_____
C
peak time of C : 9.35
E
wheather : radiation
threshold : 0.06818
memory length : 156
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.99
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.3 0.696 11.6 -1.02 4.18 2.03 1.1 0.11 -0.782 9.35 0.1113 164 9.06 --
219.19 0.69 11.6 -1.02 4.19 2.03 0.999 -- -0.782 9.33 0.12 161 9.09 --
220.46 0.692 11.6 -0.928 4.18 1.92 -- -0.707 -0.761 9.16 0.06159 155 9.45 --
222.63 0.695 11.6 -1.01 4.19 2.03 -- -- -0.774 9.35 0.06818 156 8.99 --
265.19 0.758 11.7 -1.15 -- 3.31 -- 2.36 -0.832 -- 27.36 714 3.64 --
260.43 0.757 11.7 -1.16 2.98 -- 1.66 -- -0.855 7.65 -- -- -- --
268.18 0.767 11.7 -1.12 2.98 -- -- -- -0.857 7.64 -- -- -- --
266 0.76 11.8 -1.1 -- 3.16 -- -- -0.85 -- 72.9 677 3.68 --
248.36 0.734 11.6 -- 4.16 2.04 -- -- -0.748 9.26 0.02966 159 9.46 --
746.08 1.28 11.8 -1.08 -- -- -- -- -0.813 -- -- -- -- --
301.41 0.812 11.7 -- 2.97 -- -- -- -0.732 7.67 -- -- -- --
297.84 0.804 11.7 -- -- 3.21 -- -- -0.707 -- 55.13 696 3.7 --
776.98 1.3 11.7 -- -- -- -- -- -0.692 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 212.16 temperature 25.0 270 > th dose independent rect. 14 2
2 212.67 temperature 10.0 10 > th dose dependent rect. 14 6
3 212.92 temperature 25.0 270 > th dose independent rect. 13 4
7 213.48 humidity 50.0 270 > th dose dependent rect. 22 10
15 215.93 temperature 15.0 10 > th dose independent rect. 20 18
19 216.57 temperature 20.0 10 > th dose independent rect. 14 6
20 216.83 wind 7.0 90 < th dose independent rect. 14 5
26 217.37 precipitation 0.1 90 < th dose independent rect. 19 19
27 217.37 precipitation 0.1 90 < th dose dependent rect. 19 19
28 217.40 precipitation 0.1 10 < th dose independent rect. 20 18
29 217.40 precipitation 0.1 10 < th dose dependent rect. 20 18
31 217.56 temperature 15.0 270 > th dose dependent rect. 14 2
35 217.93 precipitation 0.1 10 < th dose independent rect. 14 6
36 217.93 precipitation 0.1 10 < th dose dependent rect. 14 6
42 218.47 temperature 10.0 270 > th dose dependent rect. 12 6
43 218.61 wind 9.0 10 < th dose independent rect. 14 6
46 218.78 temperature 10.0 10 > th dose independent rect. 14 6
48 218.78 atmosphere 1010.0 10 < th dose independent rect. 14 6
51 218.78 atmosphere 995.0 10 > th dose independent rect. 20 18
53 218.88 wind 9.0 10 < th dose independent rect. 20 18
55 218.91 radiation 40.0 10 < th dose independent rect. 14 6
56 218.94 wind 1.0 10 > th dose independent rect. 14 6
57 219.02 temperature 10.0 90 > th dose independent rect. 14 5
59 219.02 atmosphere 1010.0 90 < th dose independent rect. 14 5
62 219.02 atmosphere 995.0 90 > th dose independent rect. 19 19
72 219.30 wind 9.0 90 < th dose independent rect. 19 19
74 219.38 wind 1.0 90 > th dose independent rect. 14 5
91 219.84 atmosphere 1015.0 10 < th dose dependent rect. 14 6
100 220.15 precipitation 0.1 270 < th dose independent rect. 16 22
101 220.15 precipitation 0.1 270 < th dose dependent rect. 16 22
104 220.40 temperature 10.0 1440 > th dose independent rect. 15 6
107 220.40 temperature 10.0 1440 > th dose independent rect. 21 18
111 220.43 radiation 1.0 270 > th dose independent rect. 15 1
112 220.49 wind 1.0 270 > th dose independent rect. 17 10
114 220.53 atmosphere 1015.0 90 < th dose dependent rect. 14 5
123 221.07 radiation 40.0 270 < th dose independent rect. 22 10
126 221.10 atmosphere 1015.0 10 < th dose independent rect. 20 18
129 221.12 humidity 70.0 270 > th dose independent rect. 22 10
134 221.21 humidity 90.0 10 < th dose independent rect. 20 18
135 221.22 wind 9.0 90 < th dose dependent rect. 14 5
136 221.23 temperature 10.0 270 > th dose independent rect. 22 10
137 221.23 temperature 30.0 270 < th dose independent rect. 22 10
138 221.23 humidity 50.0 270 > th dose independent rect. 22 10
140 221.23 atmosphere 995.0 270 > th dose independent rect. 22 10
141 221.23 temperature 10.0 270 > th dose independent rect. 8 14
143 221.27 wind 9.0 270 < th dose independent rect. 22 10
145 221.40 humidity 90.0 90 < th dose independent rect. 19 19
151 221.48 precipitation 0.1 14400 > th dose dependent rect. 17 1
160 221.96 precipitation 0.1 270 < th dose independent rect. 8 14
161 221.96 precipitation 0.1 270 < th dose dependent rect. 8 14
165 222.05 wind 7.0 270 < th dose independent rect. 14 2
168 222.09 atmosphere 1015.0 270 < th dose dependent rect. 14 3
173 222.19 humidity 90.0 270 < th dose independent rect. 15 1
174 222.20 radiation 40.0 270 < th dose dependent rect. 22 10
186 222.49 wind 9.0 270 < th dose independent rect. 8 14
200 222.65 precipitation 0.1 14400 < th dose independent rect. 17 1
201 222.65 precipitation 0.1 14400 < th dose dependent rect. 17 1
203 222.67 humidity 90.0 90 < th dose independent rect. 14 5
207 222.78 wind 1.0 270 > th dose independent rect. 17 21
210 222.84 atmosphere 1015.0 270 < th dose dependent rect. 15 1
215 222.93 wind 1.0 270 > th dose independent rect. 8 14
217 222.98 humidity 90.0 270 < th dose independent rect. 14 3
219 222.99 atmosphere 995.0 10 > th dose independent rect. 14 6
221 223.02 atmosphere 995.0 90 > th dose independent rect. 14 5
233 223.13 atmosphere 1015.0 270 < th dose independent rect. 8 14
239 223.27 temperature 10.0 270 > th dose independent rect. 14 2
241 223.27 atmosphere 1010.0 270 < th dose independent rect. 14 2
247 223.27 temperature 10.0 270 > th dose independent rect. 17 20
248 223.27 temperature 10.0 270 > th dose independent rect. 16 22
254 223.35 precipitation 0.1 270 < th dose independent rect. 14 2
255 223.35 precipitation 0.1 270 < th dose dependent rect. 14 2
257 223.43 precipitation 0.1 270 > th dose independent rect. 20 8
258 223.47 precipitation 0.1 14400 > th dose independent rect. 17 1
268 223.52 wind 9.0 270 < th dose independent rect. 17 20
269 223.55 radiation 1.0 270 > th dose independent rect. 12 6
290 223.82 humidity 50.0 90 > th dose independent rect. 19 19
291 223.82 atmosphere 995.0 270 > th dose independent rect. 17 20
324 224.06 wind 1.0 90 > th dose independent rect. 19 19
328 224.11 temperature 30.0 90 < th dose independent rect. 19 19
340 224.29 wind 1.0 270 > th dose independent rect. 14 3
395 224.91 temperature 10.0 270 > th dose dependent rect. 2 15
410 225.06 humidity 90.0 10 < th dose independent rect. 14 6
411 225.06 precipitation 0.1 4320 > th dose dependent rect. 3 14
420 225.18 humidity 90.0 270 < th dose independent rect. 12 6
423 225.22 wind 3.0 14400 < th dose independent rect. 1 1
427 225.31 wind 1.0 14400 > th dose dependent rect. 1 1
428 225.32 radiation 40.0 270 < th dose independent rect. 15 1
459 225.65 humidity 50.0 270 > th dose independent rect. 14 2
471 225.71 humidity 50.0 270 > th dose independent rect. 17 20
479 225.80 precipitation 0.1 270 < th dose independent rect. 22 10
480 225.80 precipitation 0.1 270 < th dose dependent rect. 22 10
507 225.95 radiation 1.0 270 > th dose dependent rect. 15 1
539 226.22 precipitation 0.1 4320 > th dose independent rect. 3 14
549 226.24 wind 3.0 14400 < th dose dependent rect. 1 2
552 226.25 precipitation 0.1 4320 < th dose independent rect. 3 14
555 226.25 precipitation 0.1 4320 < th dose dependent rect. 3 14
559 226.29 temperature 15.0 270 > th dose independent rect. 17 9
574 226.39 temperature 10.0 270 > th dose dependent rect. 12 20
576 226.41 temperature 30.0 270 < th dose independent rect. 17 20
580 226.43 wind 1.0 10 > th dose independent rect. 8 6
606 226.65 atmosphere 995.0 270 > th dose independent rect. 8 14
608 226.66 wind 3.0 14400 > th dose independent rect. 24 2
609 226.67 atmosphere 995.0 270 > th dose independent rect. 14 2
622 226.74 radiation 10.0 270 < th dose independent rect. 17 10
624 226.74 temperature 10.0 90 > th dose dependent rect. 5 14
632 226.75 precipitation 0.1 4320 > th dose dependent rect. 1 16
648 226.83 wind 3.0 14400 < th dose dependent rect. 23 4
649 226.84 radiation 40.0 270 < th dose dependent rect. 17 10
663 226.95 temperature 10.0 270 > th dose independent rect. 3 14
664 226.95 atmosphere 1015.0 270 < th dose independent rect. 3 14
665 226.95 humidity 90.0 4320 > th dose dependent rect. 8 2
666 226.96 precipitation 0.1 4320 > th dose independent rect. 7 1
667 226.96 precipitation 0.1 4320 > th dose dependent rect. 7 1
676 227.05 wind 9.0 270 < th dose independent rect. 17 10
678 227.08 humidity 50.0 270 > th dose independent rect. 17 10
686 227.18 temperature 10.0 10 > th dose dependent rect. 2 18
695 227.22 humidity 80.0 1440 < th dose independent rect. 11 1
700 227.25 wind 9.0 270 < th dose independent rect. 3 14
718 227.32 atmosphere 1015.0 270 < th dose independent rect. 22 10
721 227.33 precipitation 0.1 4320 > th dose dependent rect. 3 7
727 227.44 atmosphere 1015.0 270 < th dose independent rect. 17 20
731 227.46 radiation 10.0 270 < th dose dependent sin 16 NA
740 227.47 precipitation 0.1 4320 > th dose dependent rect. 3 11
752 227.50 precipitation 0.1 270 > th dose dependent rect. 21 7
758 227.53 humidity 50.0 10 > th dose independent rect. 14 6
790 227.70 temperature 10.0 30 > th dose dependent rect. 14 18
791 227.73 precipitation 0.1 4320 > th dose dependent rect. 4 2
797 227.77 precipitation 0.1 4320 > th dose dependent rect. 4 4
798 227.77 precipitation 0.1 270 > th dose dependent rect. 23 5
806 227.83 humidity 50.0 90 > th dose independent rect. 14 5
811 227.84 temperature 10.0 10 > th dose dependent rect. 20 18
822 227.89 precipitation 0.1 4320 < th dose independent rect. 7 1
824 227.89 precipitation 0.1 4320 < th dose dependent rect. 7 1
831 227.95 precipitation 0.1 4320 > th dose independent rect. 4 2
842 228.01 atmosphere 1010.0 90 < th dose independent rect. 19 7
853 228.04 precipitation 0.1 270 > th dose independent rect. 2 2
861 228.07 precipitation 0.1 4320 > th dose independent rect. 4 4
881 228.13 radiation 1.0 270 > th dose independent rect. 7 5
914 228.37 precipitation 0.1 4320 < th dose independent rect. 4 2
915 228.37 precipitation 0.1 4320 < th dose dependent rect. 4 2
931 228.42 humidity 90.0 90 < th dose dependent rect. 19 19
940 228.47 precipitation 0.1 270 < th dose independent rect. 17 10
942 228.47 precipitation 0.1 270 < th dose dependent rect. 17 10
951 228.51 radiation 1.0 270 > th dose independent rect. 18 19
954 228.52 temperature 10.0 10 > th dose dependent rect. 20 6
957 228.57 radiation 1.0 270 > th dose independent rect. 4 9
967 228.58 atmosphere 995.0 270 > th dose independent rect. 17 10
969 228.60 precipitation 0.1 4320 > th dose independent rect. 4 6
979 228.64 atmosphere 1010.0 10 < th dose independent rect. 20 6
988 228.65 precipitation 0.1 4320 < th dose independent rect. 1 16
991 228.65 precipitation 0.1 4320 < th dose dependent rect. 1 16
992 228.67 precipitation 0.1 4320 > th dose independent rect. 1 16
993 228.67 precipitation 0.1 270 > th dose dependent rect. 2 2
995 228.69 radiation 40.0 10 < th dose independent rect. 14 18