BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0109300 Os08g0109300|AK066688
(290 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2... 544 e-155
Os08g0288200 Adenylate kinase family protein 231 3e-61
Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP trans... 141 5e-34
Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP trans... 131 4e-31
Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48) 103 1e-22
Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48) 102 4e-22
Os03g0130400 Adenylate kinase, subfamily protein 99 3e-21
Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) ... 90 2e-18
>Os08g0109300 Similar to Adenylate kinase, chloroplast (EC 2.7.4.3) (ATP-AMP
transphosphorylase)
Length = 290
Score = 544 bits (1401), Expect = e-155, Method: Compositional matrix adjust.
Identities = 270/280 (96%), Positives = 270/280 (96%)
Query: 11 LSPPVLSAERPTVRGGLFLPPSPATSRSLRLQSARRCGISPATRKPRSLPRXXXXXXXXX 70
LSPPVLSAERPTVRGGLFLPPSPATSRSLRLQSARRCGISPATRKPRSLPR
Sbjct: 11 LSPPVLSAERPTVRGGLFLPPSPATSRSLRLQSARRCGISPATRKPRSLPRAAKVVVAVK 70
Query: 71 XDPLKVMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQ 130
DPLKVMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQ
Sbjct: 71 ADPLKVMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQ 130
Query: 131 LVPDEIVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETLNIRPDIFILLDVPDELL 190
LVPDEIVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETLNIRPDIFILLDVPDELL
Sbjct: 131 LVPDEIVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETLNIRPDIFILLDVPDELL 190
Query: 191 VERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLQTHYQNVESLLS 250
VERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLQTHYQNVESLLS
Sbjct: 191 VERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLQTHYQNVESLLS 250
Query: 251 IYEDVIVEVKGDALVDDVFAEIDKQLTSSLDKKTEMVASA 290
IYEDVIVEVKGDALVDDVFAEIDKQLTSSLDKKTEMVASA
Sbjct: 251 IYEDVIVEVKGDALVDDVFAEIDKQLTSSLDKKTEMVASA 290
>Os08g0288200 Adenylate kinase family protein
Length = 493
Score = 231 bits (590), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 143/177 (80%)
Query: 100 VHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLLQPDAQEKGWLLDG 159
VHIS GDLLRAE+++G+E GK+AKE+M+ G LVPD++V +MV RL QPD +E+GWLLDG
Sbjct: 1 VHISTGDLLRAEVSSGTEIGKKAKEYMDNGMLVPDQVVTDMVVSRLSQPDVRERGWLLDG 60
Query: 160 YPRSYSQAMALETLNIRPDIFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEI 219
YPRSY+QA +LE++ IRPDIFI+L+VPD++L++R VGRRLDP TGKIYH+K PPEN+E+
Sbjct: 61 YPRSYAQAQSLESMKIRPDIFIVLEVPDDILIDRCVGRRLDPETGKIYHIKNFPPENDEV 120
Query: 220 ASRLTQRFDDTEEKVKLRLQTHYQNVESLLSIYEDVIVEVKGDALVDDVFAEIDKQL 276
++RL R DDT EKVK RL T+ QN E+++ Y D++ ++ G+ V+ VF EID L
Sbjct: 121 SARLVTRSDDTFEKVKSRLDTYKQNSEAVIPTYSDLLNQIDGNRQVEVVFNEIDSLL 177
>Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 243
Score = 141 bits (356), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 129/213 (60%), Gaps = 11/213 (5%)
Query: 75 KVMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 134
++++ G P SGKGTQ +IK +Y L H++ GD+LRA +AA + G +AKE M+KG+LV D
Sbjct: 32 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSD 91
Query: 135 EIVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETL----NIRPDIFILLDVPDELL 190
++VV ++ E + +P Q KG++LDG+PR+ QA L+ + + D + + D +L
Sbjct: 92 DLVVGIIDEAMKKPSCQ-KGFILDGFPRTVVQAQKLDEMLEKKGTKVDKVLNFAIDDSIL 150
Query: 191 VERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLQTHYQNVE 246
ER+ GR + P +G+ YH K++PP+ ++ L QR DDT E +K RL+ ++ E
Sbjct: 151 EERITGRWIHPSSGRSYHTKFAPPKVPGVDDVTGEPLIQRKDDTAEVLKSRLEAFHKQTE 210
Query: 247 SLLSIY--EDVIVEVKGDALVDDVFAEIDKQLT 277
++ Y + ++ + + +V AE+ K L+
Sbjct: 211 PVIDYYSKKALVANLHAEKPPKEVTAEVQKVLS 243
>Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 241
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/213 (33%), Positives = 124/213 (58%), Gaps = 11/213 (5%)
Query: 75 KVMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 134
+V++ G P GKGTQ LIK ++ L H++ GD+LRA +AA + G +AKE M+KG+LV D
Sbjct: 30 RVILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 89
Query: 135 EIVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETL----NIRPDIFILLDVPDELL 190
++VV ++ E + + Q KG++LDG+PR+ QA L+ + + D + + D +L
Sbjct: 90 DLVVGIIDEAMKKTSCQ-KGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAIL 148
Query: 191 VERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDDTEEKVKLRLQTHYQNVE 246
ER+ GR + P +G+ YH K++PP+ ++ L QR DDT +K RL+ + +
Sbjct: 149 EERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTK 208
Query: 247 SLLSIY--EDVIVEVKGDALVDDVFAEIDKQLT 277
++ Y + ++ + + +V E+ K L+
Sbjct: 209 PVIDYYTKKGIVANLHAEKPPKEVTVEVQKALS 241
>Os02g0778400 Similar to UMP/CMP kinase a (EC 2.7.1.48)
Length = 214
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 76 VMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDE 135
V + G P SGKGTQC I +G +H+SAGDLLRAEI +GSENG + +++G++VP E
Sbjct: 30 VFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSE 89
Query: 136 IVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETLN-IRPDIFILLDVPDELLVERV 194
+ + +++E +++ + +L+DG+PR+ A E + I P + D +E + R+
Sbjct: 90 VTIKLLQEAMIKSGNDK--FLIDGFPRNEENRAAFENVTKITPAFVLFFDCSEEEMERRL 147
Query: 195 VGRR 198
+GR
Sbjct: 148 LGRN 151
>Os07g0624700 UMP/CMP kinase a (EC 2.7.1.48)
Length = 210
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 77/124 (62%), Gaps = 3/124 (2%)
Query: 76 VMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDE 135
V + G P SGKGTQC I +G H+SAGDLLRAEI +GSENG + +++G++VP E
Sbjct: 27 VFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSE 86
Query: 136 IVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETLN-IRPDIFILLDVPDELLVERV 194
+ + ++++ +++ + + +L+DG+PR+ A E + I P + D +E + R+
Sbjct: 87 VTIKLLQDAMIKNENDK--FLIDGFPRNEENRAAFENVTKISPAFVLFFDCSEEEMERRL 144
Query: 195 VGRR 198
+GR
Sbjct: 145 LGRN 148
>Os03g0130400 Adenylate kinase, subfamily protein
Length = 293
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 21/180 (11%)
Query: 80 GAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVN 139
G P GKGT + G+ HI+ GDL+R E+A+ + E + +G+LV DEI++N
Sbjct: 67 GCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGKLVSDEIIIN 126
Query: 140 MVKERLLQPDAQ-EKGWLLDGYPRSYSQAMALETLNIRPDIFILLDVPDELLVERVVGRR 198
++ +RL + + Q E G++LDG+PR+ QA L+ + D+ + L + +++LVE+ +GRR
Sbjct: 127 LLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVT-DIDMVVNLKLREDVLVEKCLGRR 185
Query: 199 LDPVTGK-----------------IYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLQTH 241
+ GK IY PP N S+L R DDTEE V+ RLQ +
Sbjct: 186 ICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNN--CMSKLITRADDTEEVVRNRLQIY 243
>Os06g0109600 Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase)
Length = 243
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 94/203 (46%), Gaps = 36/203 (17%)
Query: 76 VMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDE 135
V + G P SGKGTQC I ++G H+SAGDLLR E +E G K M +G+LV +
Sbjct: 22 VFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGKLVSSD 81
Query: 136 IVVNMVKERLLQPDAQEKG---WLLDGYPRSYSQAMALET-LNIRPDIFILLDVPDELLV 191
++V +LL +E G +L+DG+PR+ A E ++I P+ + +D E +
Sbjct: 82 LIV-----KLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHIEPEFLLFIDCSKEEME 136
Query: 192 ERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTEEKVKLRLQTHYQNVESLLSI 251
R++ R R DD + ++ R Q ++
Sbjct: 137 RRILNRN-------------------------QGRDDDNIDTIRRRFDVFQQQTLPVIQY 171
Query: 252 YED--VIVEVKGDALVDDVFAEI 272
YE + +V G+ VD+VF ++
Sbjct: 172 YEKRGKLRKVDGNRQVDEVFEDV 194
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.134 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,260,372
Number of extensions: 382877
Number of successful extensions: 1232
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1220
Number of HSP's successfully gapped: 8
Length of query: 290
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 190
Effective length of database: 11,814,401
Effective search space: 2244736190
Effective search space used: 2244736190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)