Os08g0288200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Adenylate kinase family protein.
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Os08g0288200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Adenylate kinase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.36 | 0.35 | 10.5 | -0.376 | 0.537 | -0.542 | 0.0533 | 6.98 | -0.596 | 7.41 | 26.15 | 3765 | -- | -- |
| 61.27 | 0.365 | 10.7 | -2.04 | 0.557 | 0.474 | 0.309 | -- | -1.03 | 7.08 | 31.93 | 20585 | -- | -- |
| 54.86 | 0.345 | 10.4 | -0.0286 | 0.52 | -0.856 | -- | 9.57 | -0.622 | 7.4 | 27.99 | 3213 | -- | -- |
| 60.61 | 0.363 | 10.7 | -2.01 | 0.529 | 0.455 | -- | -- | -1.06 | 7.38 | 31.71 | 19203 | -- | -- |
| 67.27 | 0.382 | 10.4 | 0.278 | -- | -1.04 | -- | 10.5 | -0.47 | -- | 27.14 | 2151 | -- | -- |
| 65.92 | 0.381 | 10.6 | -1.81 | 0.566 | -- | -0.0727 | -- | -0.875 | 7.36 | -- | -- | -- | -- |
| 65.94 | 0.38 | 10.6 | -1.81 | 0.566 | -- | -- | -- | -0.875 | 7.35 | -- | -- | -- | -- |
| 77.51 | 0.41 | 10.7 | -1.97 | -- | 0.431 | -- | -- | -1.05 | -- | 31.7 | 20135 | -- | -- |
| 113.67 | 0.497 | 10.6 | -- | 0.501 | -0.811 | -- | -- | -0.63 | 7.52 | 34.96 | 47426 | -- | -- |
| 82.97 | 0.426 | 10.6 | -1.8 | -- | -- | -- | -- | -0.865 | -- | -- | -- | -- | -- |
| 152.09 | 0.577 | 10.6 | -- | 0.55 | -- | -- | -- | -0.673 | 7.57 | -- | -- | -- | -- |
| 108.73 | 0.486 | 10.5 | -- | -- | -1.24 | -- | -- | -0.294 | -- | 3.29 | 47520 | -- | -- |
| 168.29 | 0.606 | 10.6 | -- | -- | -- | -- | -- | -0.666 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 50.93 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 6 | 52.97 | radiation | 30 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 10 | 53.30 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 30 | 54.13 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 39 | 54.62 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 48 | 54.80 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 20 |
| 52 | 54.81 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 12 |
| 55 | 54.81 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 17 |
| 58 | 54.82 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 105 | 55.07 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 128 | 55.28 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 135 | 55.39 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 166 | 55.58 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 180 | 55.62 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 199 | 55.67 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 201 | 55.70 | radiation | 10 | 1440 | < th | dose independent | sin | 19 | NA |
| 217 | 55.82 | humidity | 70 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 228 | 55.86 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 235 | 55.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 240 | 55.92 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 241 | 55.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 261 | 56.00 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 268 | 56.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 274 | 56.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 288 | 56.05 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 293 | 56.06 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 298 | 56.09 | humidity | 70 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 300 | 56.09 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 306 | 56.10 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 309 | 56.10 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 330 | 56.11 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 338 | 56.14 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 341 | 56.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 394 | 56.28 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 453 | 56.33 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 14 |
| 458 | 56.35 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 459 | 56.35 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 462 | 56.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 11 |
| 468 | 56.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 9 | 7 |
| 470 | 56.39 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 481 | 56.41 | temperature | 30 | 4320 | < th | dose independent | rect. | 24 | 16 |
| 484 | 56.41 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 514 | 56.47 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 516 | 56.47 | temperature | 30 | 4320 | > th | dose independent | rect. | 9 | 7 |
| 538 | 56.48 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 18 |
| 542 | 56.49 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 18 |
| 552 | 56.51 | humidity | 70 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 587 | 56.55 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 620 | 56.60 | wind | 1 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 655 | 56.63 | radiation | 20 | 1440 | < th | dose independent | rect. | 4 | 20 |
| 664 | 56.63 | radiation | 20 | 1440 | < th | dose dependent | sin | 23 | NA |
| 666 | 56.64 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 718 | 56.65 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 728 | 56.65 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 12 |
| 735 | 56.67 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 738 | 56.67 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 741 | 56.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 743 | 56.68 | radiation | 40 | 4320 | < th | dose independent | rect. | 14 | 13 |
| 745 | 56.68 | temperature | 25 | 4320 | > th | dose dependent | sin | 12 | NA |
| 763 | 56.70 | temperature | 30 | 4320 | < th | dose independent | sin | 3 | NA |
| 809 | 56.72 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 5 |
| 825 | 56.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 2 |
| 980 | 56.84 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 989 | 56.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |