Os03g0130400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Adenylate kinase, subfamily protein.
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Os03g0130400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Adenylate kinase, subfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.43 | 0.313 | 12.6 | -0.89 | 0.404 | 0.482 | 0.864 | 0.0421 | -0.072 | 0.512 | 10.3 | 8 | -- | -- |
| 44.22 | 0.312 | 12.6 | -0.897 | 0.398 | 0.494 | 0.867 | -- | -0.0731 | 0.525 | 10.3 | 8 | -- | -- |
| 45.94 | 0.318 | 12.6 | -0.904 | 0.418 | 0.469 | -- | -0.887 | -0.0761 | 0.732 | 3.3 | 8 | -- | -- |
| 47.07 | 0.322 | 12.6 | -0.905 | 0.299 | 0.549 | -- | -- | -0.0703 | 0.996 | 34.75 | 7 | -- | -- |
| 51.03 | 0.335 | 12.6 | -0.887 | -- | 0.283 | -- | -0.84 | -0.0659 | -- | 35.26 | 9 | -- | -- |
| 48.27 | 0.326 | 12.6 | -0.884 | 0.192 | -- | 0.831 | -- | -0.0749 | 0.357 | -- | -- | -- | -- |
| 51.12 | 0.335 | 12.6 | -0.917 | 0.196 | -- | -- | -- | -0.08 | 1.34 | -- | -- | -- | -- |
| 51.73 | 0.336 | 12.6 | -0.898 | -- | 0.357 | -- | -- | -0.0686 | -- | 39.4 | 19 | -- | -- |
| 67.72 | 0.383 | 12.6 | -- | 0.316 | 0.646 | -- | -- | 0.015 | 0.798 | 33.7 | 49 | -- | -- |
| 53.49 | 0.342 | 12.6 | -0.91 | -- | -- | -- | -- | -0.0759 | -- | -- | -- | -- | -- |
| 73.29 | 0.4 | 12.6 | -- | 0.181 | -- | -- | -- | 0.0222 | 1.16 | -- | -- | -- | -- |
| 70.09 | 0.39 | 12.6 | -- | -- | 0.799 | -- | -- | 0.0257 | -- | 54.75 | 79 | -- | -- |
| 75.31 | 0.405 | 12.6 | -- | -- | -- | -- | -- | 0.025 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.17 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 2 | 40.49 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 21 | 41.39 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 18 |
| 25 | 41.53 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 30 | 41.56 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 57 | 42.08 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 91 | 42.60 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 93 | 42.60 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 111 | 42.78 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 127 | 42.88 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 130 | 42.90 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 132 | 42.91 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 162 | 43.11 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 2 | 12 |
| 163 | 43.13 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 166 | 43.14 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 171 | 43.17 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 183 | 43.22 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 20 | 18 |
| 186 | 43.24 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 189 | 43.26 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 208 | 43.33 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 217 | 43.35 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 21 | 9 |
| 224 | 43.37 | humidity | 80.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 226 | 43.37 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 244 | 43.41 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 270 | 43.53 | humidity | 60.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 281 | 43.56 | humidity | 80.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 285 | 43.57 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 17 |
| 293 | 43.59 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 295 | 43.59 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 9 | 3 |
| 300 | 43.59 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 15 | 21 |
| 303 | 43.60 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 304 | 43.60 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 1 | 11 |
| 311 | 43.62 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 312 | 43.62 | radiation | 40.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 318 | 43.63 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 333 | 43.64 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 24 | 13 |
| 345 | 43.65 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 15 |
| 348 | 43.66 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 383 | 43.72 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 403 | 43.75 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 407 | 43.76 | wind | 9.0 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 418 | 43.78 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 22 | 6 |
| 466 | 43.83 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 470 | 43.83 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 474 | 43.84 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 480 | 43.85 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 491 | 43.86 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 495 | 43.87 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 501 | 43.87 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 507 | 43.88 | humidity | 80.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 508 | 43.89 | temperature | 20.0 | 720 | > th | dose independent | rect. | 15 | 8 |
| 510 | 43.89 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 517 | 43.90 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 562 | 43.93 | wind | 9.0 | 43200 | > th | dose independent | rect. | 24 | 4 |
| 563 | 43.93 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 15 |
| 577 | 43.93 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 597 | 43.95 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 609 | 43.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 611 | 43.96 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 616 | 43.96 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 22 |
| 636 | 43.97 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 9 |
| 641 | 43.98 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 642 | 43.98 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 9 |
| 646 | 43.98 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 651 | 43.98 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 15 |
| 653 | 43.98 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 15 |
| 655 | 43.98 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 23 |
| 664 | 43.99 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 15 | 6 |
| 674 | 44.00 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 682 | 44.01 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 9 |
| 685 | 44.01 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 18 |
| 689 | 44.01 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 698 | 44.02 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 701 | 44.02 | radiation | 40.0 | 10 | < th | dose independent | rect. | 23 | 21 |
| 712 | 44.03 | radiation | 20.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 737 | 44.04 | wind | 5.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 738 | 44.04 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 16 |
| 780 | 44.06 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 796 | 44.07 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 800 | 44.08 | humidity | 80.0 | 43200 | > th | dose independent | no | NA | NA |
| 802 | 44.08 | radiation | 30.0 | 10 | > th | dose independent | rect. | 9 | 3 |
| 804 | 44.08 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 12 |
| 814 | 44.08 | radiation | 10.0 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 819 | 44.08 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 22 | 10 |
| 823 | 44.09 | wind | 9.0 | 43200 | < th | dose independent | rect. | 4 | 5 |
| 836 | 44.09 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 18 |
| 848 | 44.10 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 10 |
| 858 | 44.10 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 863 | 44.11 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 9 |
| 866 | 44.11 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 869 | 44.11 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 874 | 44.11 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 9 |
| 875 | 44.11 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 910 | 44.12 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 16 |
| 917 | 44.13 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 918 | 44.13 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 930 | 44.13 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 950 | 44.14 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 965 | 44.14 | wind | 9.0 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 970 | 44.15 | wind | 9.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 972 | 44.15 | wind | 9.0 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 980 | 44.15 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 17 | 1 |