BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0109600 Os06g0109600|AK066989
(243 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G26667.1 | chr5:9276659-9277788 FORWARD LENGTH=209 233 5e-62
AT3G60180.2 | chr3:22242781-22244015 REVERSE LENGTH=205 231 2e-61
AT4G25280.1 | chr4:12939068-12940723 REVERSE LENGTH=250 194 5e-50
AT3G60961.1 | chr3:22541319-22552253 FORWARD LENGTH=137 145 2e-35
AT5G35170.1 | chr5:13419278-13423482 FORWARD LENGTH=589 89 3e-18
AT5G47840.1 | chr5:19375488-19378058 FORWARD LENGTH=284 83 1e-16
AT5G63400.1 | chr5:25393274-25394817 REVERSE LENGTH=247 77 6e-15
AT5G50370.1 | chr5:20509382-20510631 REVERSE LENGTH=249 76 2e-14
AT2G39270.1 | chr2:16399983-16401408 FORWARD LENGTH=296 71 5e-13
AT2G37250.1 | chr2:15641991-15643318 FORWARD LENGTH=285 70 1e-12
AT3G01820.1 | chr3:293981-295357 REVERSE LENGTH=264 49 2e-06
>AT5G26667.1 | chr5:9276659-9277788 FORWARD LENGTH=209
Length = 208
Score = 233 bits (595), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 107/184 (58%), Positives = 143/184 (77%)
Query: 16 GKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEG 75
GKK T++FV+GGPGSGKGTQCA IV+ +G+THLSAGDLLR E K +E GTMI+N++ EG
Sbjct: 11 GKKPTVIFVLGGPGSGKGTQCAYIVEHYGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEG 70
Query: 76 KLVSSDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHIEPEFLLFIDCSKEEM 135
K+V S++ +KLL KA++E+GNDKFL+DGFPRNEENR A+E + IEP+F+LF DC +EEM
Sbjct: 71 KIVPSEVTIKLLQKAIQENGNDKFLIDGFPRNEENRAAFEKVTEIEPKFVLFFDCPEEEM 130
Query: 136 ERRILNRNQGXXXXXXXXXXXXXXVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDVK 195
E+R+L RNQG VF + +LPVI YYE +GK+RK++ + ++ VFE+VK
Sbjct: 131 EKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIHYYEAKGKVRKINAAKPIEAVFEEVK 190
Query: 196 AIFA 199
AIF+
Sbjct: 191 AIFS 194
>AT3G60180.2 | chr3:22242781-22244015 REVERSE LENGTH=205
Length = 204
Score = 231 bits (590), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 107/187 (57%), Positives = 138/187 (73%)
Query: 14 PPGKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMN 73
P KK T+VFV+GGPGSGKGTQCA +VK F +TH SAGDLLR E K +E G MI++++
Sbjct: 16 PRWKKSTVVFVLGGPGSGKGTQCANVVKHFSYTHFSAGDLLRAEIKSGSEFGAMIQSMIA 75
Query: 74 EGKLVSSDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHIEPEFLLFIDCSKE 133
EG++V S++ VKLL KAM ESGNDKFL+DGFPRNEENR+ +EN+ IEP F+LF DC +E
Sbjct: 76 EGRIVPSEITVKLLCKAMEESGNDKFLIDGFPRNEENRNVFENVARIEPAFVLFFDCPEE 135
Query: 134 EMERRILNRNQGXXXXXXXXXXXXXXVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFED 193
E+ERRI++RNQG VF + TLP+I YYE +GKLRK++ + +EVFE
Sbjct: 136 ELERRIMSRNQGREDDNIETIKKRFKVFVESTLPIISYYESKGKLRKINAAKSSEEVFEA 195
Query: 194 VKAIFAQ 200
V+ +FA
Sbjct: 196 VRVLFAS 202
>AT4G25280.1 | chr4:12939068-12940723 REVERSE LENGTH=250
Length = 249
Score = 194 bits (492), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/186 (51%), Positives = 120/186 (64%)
Query: 13 PPPGKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLM 72
PP K I FV+GGPGSGKGTQC KIV+ FG HLSAGDLLR E TE G MI NL+
Sbjct: 37 PPKEKAPFITFVLGGPGSGKGTQCEKIVETFGLQHLSAGDLLRREIAMHTENGAMILNLI 96
Query: 73 NEGKLVSSDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIIHIEPEFLLFIDCSK 132
+GK+V S++ VKL+ K + S N KFL+DGFPR EENR A+E II +P+ +LF DC +
Sbjct: 97 KDGKIVPSEVTVKLIQKELESSDNRKFLIDGFPRTEENRVAFERIIRADPDVVLFFDCPE 156
Query: 133 EEMERRILNRNQGXXXXXXXXXXXXXXVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFE 192
EEM +R+LNRNQG +F PVI YY+ +GKL ++ VD++F+
Sbjct: 157 EEMVKRVLNRNQGRIDDNITTMKKRLKIFNALNRPVIDYYKNKGKLYTINAVGTVDDIFQ 216
Query: 193 DVKAIF 198
V IF
Sbjct: 217 HVLPIF 222
>AT3G60961.1 | chr3:22541319-22552253 FORWARD LENGTH=137
Length = 136
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 93/133 (69%), Gaps = 4/133 (3%)
Query: 71 LMNEGKLVSSDLIVKLLFKAMRES----GNDKFLVDGFPRNEENRHAYENIIHIEPEFLL 126
++ EG++V S++ VKLL KAM ES GNDKFL+DGFPRNEENR +EN+ IEP F+L
Sbjct: 1 MIAEGRIVPSEITVKLLCKAMEESFQVSGNDKFLIDGFPRNEENRIVFENVARIEPAFVL 60
Query: 127 FIDCSKEEMERRILNRNQGXXXXXXXXXXXXXXVFQQQTLPVIQYYEKRGKLRKVDGNRQ 186
F DC +EE+ERRI++RNQG VF + TLP+I YY+ +GKLRK++ +
Sbjct: 61 FFDCPEEELERRIMSRNQGREDDNIETIKKRFKVFVESTLPIISYYQSKGKLRKINAAKS 120
Query: 187 VDEVFEDVKAIFA 199
+EVFE V+ +FA
Sbjct: 121 SEEVFEAVRVLFA 133
>AT5G35170.1 | chr5:13419278-13423482 FORWARD LENGTH=589
Length = 588
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 38/223 (17%)
Query: 22 VFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGKLVSSD 81
V + G P SGKGTQC IV +FG H+S GDLLR E T+ G K MN G LV +
Sbjct: 82 VMISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSSGTDIGKRAKEFMNSGSLVPDE 141
Query: 82 LIVKLLF-KAMRESGNDK-FLVDGFPRNEENRHAYENIIHIEPEFLLFIDCSKE------ 133
+++ ++ + RE + +L+DGFPR+ + + ++++P+ + +D E
Sbjct: 142 IVIAMVAGRLSREDAKEHGWLLDGFPRSFAQAQSLDK-LNVKPDIFILLDVPDEILIDRC 200
Query: 134 -----------------------EMERRILNRNQGXXXXXXXXXXXXXXVFQQQTLPVIQ 170
E++ R++ R +++Q + +I
Sbjct: 201 VGRRLDPVTGKIYHIKNYPPESDEIKARLVTRPDD----TEEKVKARLQIYKQNSEAIIS 256
Query: 171 YYEKRGKLRKVDGNRQVDEVFEDVKAIFAQLNNQKIHGGQQAS 213
Y + K+D NR + VFE+ + + +Q+ +++ +AS
Sbjct: 257 AYSD--VMVKIDANRPKEVVFEETQTLLSQIQLKRMIKTDKAS 297
>AT5G47840.1 | chr5:19375488-19378058 FORWARD LENGTH=284
Length = 283
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 26/209 (12%)
Query: 22 VFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGKLVSSD 81
+ + G P SGKGTQC I ++G H+SAGDLLR E +E G K M +G+LV +
Sbjct: 67 IMISGAPASGKGTQCELITHKYGLVHISAGDLLRAEIASGSENGRRAKEHMEKGQLVPDE 126
Query: 82 LIVKLLFKAMRESGNDK--FLVDGFPRNEENRHAYENIIHIEPEFLLFIDCSKEEMERRI 139
++V ++ + ++ +++ +L+DG+PR+ A + +P+ + ++ +E + R+
Sbjct: 127 IVVMMVKDRLSQTDSEQKGWLLDGYPRSASQATALKG-FGFQPDLFIVLEVPEEILIERV 185
Query: 140 LNRNQGXXXXXXXXXXXXXXVFQQQTLPVIQYY---EKRGKLR----------------- 179
+ R ++ + + Q + E++ KLR
Sbjct: 186 VGRRLDPVTGKIYHLKYSPPETEEIAVRLTQRFDDTEEKAKLRLKTHNQNVSDVLSMYDD 245
Query: 180 ---KVDGNRQVDEVFEDVKAIFAQLNNQK 205
K++GNR +EVF + + ++L ++
Sbjct: 246 ITIKIEGNRSKEEVFAQIDSSLSELLQER 274
>AT5G63400.1 | chr5:25393274-25394817 REVERSE LENGTH=247
Length = 246
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 85/211 (40%), Gaps = 33/211 (15%)
Query: 22 VFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGKLVSSD 81
+ IG PGSGKGTQ + ++ HLS GD+LR T G K M +G+LVS D
Sbjct: 36 LIFIGPPGSGKGTQSPVVKDEYCLCHLSTGDMLRAAVASKTPLGVKAKEAMEKGELVSDD 95
Query: 82 LIVKLLFKAMRESGNDK-FLVDGFPRNEENRHAYENIIH---IEPEFLLFIDCSKEEMER 137
L+V ++ +AM + K F++DGFPR + ++ E + +L +E
Sbjct: 96 LVVGIIDEAMNKPKCQKGFILDGFPRTVTQAEKLDEMLKRRGTEIDKVLNFAIDDAILEE 155
Query: 138 RILNR----NQGXXXXXXXXXXXXXXV-------------------------FQQQTLPV 168
RI R + G V F QT PV
Sbjct: 156 RITGRWIHPSSGRSYHTKFAPPKTPGVDDITGEPLIQRKDDNADVLKSRLAAFHSQTQPV 215
Query: 169 IQYYEKRGKLRKVDGNRQVDEVFEDVKAIFA 199
I YY K+ L + + EV +VK +
Sbjct: 216 IDYYAKKAVLTNIQAEKAPQEVTSEVKKALS 246
>AT5G50370.1 | chr5:20509382-20510631 REVERSE LENGTH=249
Length = 248
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 87/202 (43%), Gaps = 34/202 (16%)
Query: 21 IVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGKLVSS 80
+VF IG PGSGKGTQ I +F HLS GD+LR T G K M++G+LVS
Sbjct: 37 LVF-IGPPGSGKGTQSPVIKDEFCLCHLSTGDMLRAAVAAKTPLGVKAKEAMDKGELVSD 95
Query: 81 DLIVKLLFKAM-RESGNDKFLVDGFPRNEENRHAYENIIH-----IEPEFLLFIDCS--K 132
DL+V ++ +AM R F++DGFPR + +++ I+ ID S +
Sbjct: 96 DLVVGIMDEAMNRPKCQKGFILDGFPRTVTQAEKLDEMLNRRGAQIDKVLNFAIDDSVLE 155
Query: 133 EEMERRILNRNQGXXXXXXXXXXXXXXV-------------------------FQQQTLP 167
E + R ++ + G V F +QT P
Sbjct: 156 ERITGRWIHPSSGRSYHTKFAPPKVPGVDDLTGEPLIQRKDDNADVLRSRLDAFHKQTQP 215
Query: 168 VIQYYEKRGKLRKVDGNRQVDE 189
VI YY K+ L + + +E
Sbjct: 216 VIDYYAKKENLVNIPAEKAPEE 237
>AT2G39270.1 | chr2:16399983-16401408 FORWARD LENGTH=296
Length = 295
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 7 NHIESFPPPGKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGT 66
+ + P G+ VF +G PG GKGT +++ G H++ GDL+REE +
Sbjct: 53 SSTSTSPYKGRNFHWVF-LGCPGVGKGTYASRLSSLLGVPHIATGDLVREELSSSGLLSS 111
Query: 67 MIKNLMNEGKLVSSDLIVKLLFK---AMRESGNDKFLVDGFPRNEENRHAYENIIHIE 121
+K L+N GKLV + I+ LL K A ++ G +++DGFPR E + +I+
Sbjct: 112 QLKELVNHGKLVPDEFIISLLSKRLQAGKDKGESGYILDGFPRTVTQAEILEGVTNID 169
>AT2G37250.1 | chr2:15641991-15643318 FORWARD LENGTH=285
Length = 284
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 14 PPGKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMN 73
P + + VF +G PG GKGT +++ G H++ GDL+REE + ++N
Sbjct: 47 PKDRNVQWVF-LGCPGVGKGTYASRLSTLLGVPHIATGDLVREELASSGPLSQKLSEIVN 105
Query: 74 EGKLVSSDLIVKLLFK---AMRESGNDKFLVDGFPRNEENRHAYENIIHIE-------PE 123
+GKLVS ++IV LL K A G F++DGFPR ++ I+ PE
Sbjct: 106 QGKLVSDEIIVDLLSKRLEAGEARGESGFILDGFPRTMRQAEILGDVTDIDLVVNLKLPE 165
Query: 124 FLLFIDC 130
+L C
Sbjct: 166 EVLVDKC 172
>AT3G01820.1 | chr3:293981-295357 REVERSE LENGTH=264
Length = 263
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 15 PGKKITIVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNE 74
P + + V +G PG+ + ++ K H+S G L+R+E + I + +NE
Sbjct: 59 PDRGVQWVL-MGAPGAWRHVFAERLSKLLEVPHISMGSLVRQELNPRSSLYKEIASAVNE 117
Query: 75 GKLVSSDLIVKLLFKAMRES---GNDKFLVDGFPRNEENRHAYENIIHIEPEFLLFIDCS 131
KLV ++ LL K + E G F++ G PR + I I + ++ + CS
Sbjct: 118 RKLVPKSVVFALLSKRLEEGYARGETGFILHGIPRTRFQAETLDQIAQI--DLVVNLKCS 175
Query: 132 KEEMERRILNRNQ 144
++ + +NRN+
Sbjct: 176 EDHL----VNRNE 184
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,445,387
Number of extensions: 220118
Number of successful extensions: 549
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 545
Number of HSP's successfully gapped: 11
Length of query: 243
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 147
Effective length of database: 8,474,633
Effective search space: 1245771051
Effective search space used: 1245771051
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)