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Os08g0118900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Adenylate kinase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.024) R2 : 0.91
β1 : -0.795 (0.0877) R2dD : 0.0167 R2D : 0.00742
β2 : 3.46 (0.0655) R2dC : 0.628 R2C : 0.777
β3 : -1.12 (0.0537) R2dE : 0.0967 R2E : 0.261
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.515 (0.0511) R2dN8 : 0.0269 R2N8 : 0.00577
σ : 0.448
deviance : 92.42
__
_____
C
peak time of C : 7.37
E
wheather : radiation
threshold : 23.04
memory length : 9
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.31 0.444 11.4 -0.8 3.48 -1.1 -0.881 -0.845 -0.514 7.38 23.68 9 -- --
92.07 0.447 11.4 -0.787 3.46 -1.14 -0.366 -- -0.52 7.35 23.04 8 -- --
90.91 0.444 11.4 -0.807 3.48 -1.1 -- -0.551 -0.514 7.39 23.53 9 -- --
92.42 0.448 11.4 -0.795 3.46 -1.12 -- -- -0.515 7.37 23.04 9 -- --
621.43 1.17 11.4 -0.676 -- -1.93 -- -0.428 -0.488 -- 8.184 6 -- --
115.14 0.503 11.3 -0.752 3.98 -- 0.0615 -- -0.499 8.37 -- -- -- --
115.15 0.503 11.3 -0.75 3.98 -- -- -- -0.499 8.37 -- -- -- --
611.27 1.15 11.4 -0.658 -- -1.99 -- -- -0.488 -- 8.88 2 -- --
108.83 0.486 11.3 -- 3.47 -1.09 -- -- -0.435 7.43 23.01 9 -- --
997.35 1.48 11.4 -0.727 -- -- -- -- -0.457 -- -- -- -- --
129.97 0.533 11.3 -- 3.98 -- -- -- -0.415 8.38 -- -- -- --
622.71 1.16 11.4 -- -- -1.99 -- -- -0.414 -- 9.034 2 -- --
1011.29 1.48 11.4 -- -- -- -- -- -0.377 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.24 radiation 10.0 90 > th dose independent rect. 8 6
4 81.82 radiation 20.0 270 < th dose independent rect. 22 10
5 81.89 radiation 40.0 10 < th dose dependent rect. 12 22
10 82.10 radiation 40.0 270 < th dose dependent rect. 22 10
13 82.69 temperature 10.0 90 > th dose dependent rect. 8 6
17 82.96 temperature 10.0 270 > th dose independent rect. 22 10
18 82.96 temperature 30.0 270 < th dose independent rect. 22 10
19 82.96 humidity 50.0 270 > th dose independent rect. 22 10
21 82.96 atmosphere 995.0 270 > th dose independent rect. 22 10
22 82.96 temperature 10.0 270 > th dose independent rect. 8 14
23 82.97 wind 9.0 270 < th dose independent rect. 22 10
28 83.10 wind 9.0 270 < th dose independent rect. 8 14
29 83.13 temperature 10.0 10 > th dose dependent rect. 8 6
35 83.36 wind 1.0 270 > th dose independent rect. 12 6
54 83.65 radiation 40.0 90 < th dose independent rect. 13 6
58 83.83 wind 9.0 270 < th dose independent rect. 18 18
59 83.85 atmosphere 995.0 270 > th dose independent rect. 18 18
61 83.88 humidity 50.0 270 > th dose independent rect. 18 18
76 83.96 precipitation 0.1 270 < th dose independent rect. 8 14
77 83.96 precipitation 0.1 270 < th dose dependent rect. 8 14
78 83.97 temperature 10.0 270 > th dose independent rect. 12 6
80 83.97 atmosphere 1015.0 270 < th dose independent rect. 12 6
81 83.97 temperature 10.0 270 > th dose independent rect. 18 18
84 84.01 precipitation 0.1 270 < th dose independent rect. 22 10
85 84.01 precipitation 0.1 270 < th dose dependent rect. 22 10
90 84.19 humidity 80.0 10 < th dose independent rect. 9 5
97 84.29 radiation 10.0 270 < th dose independent rect. 17 10
98 84.30 wind 9.0 270 < th dose independent rect. 12 6
103 84.50 wind 9.0 270 < th dose independent rect. 17 10
106 84.52 precipitation 0.1 270 < th dose independent rect. 17 20
107 84.52 radiation 40.0 270 < th dose dependent rect. 17 10
108 84.52 precipitation 0.1 270 < th dose dependent rect. 17 20
113 84.60 precipitation 0.1 270 < th dose independent rect. 18 18
114 84.60 precipitation 0.1 270 < th dose dependent rect. 18 18
118 84.64 temperature 10.0 270 > th dose independent rect. 17 10
122 84.64 temperature 10.0 270 > th dose independent rect. 3 14
123 84.64 atmosphere 1015.0 270 < th dose independent rect. 3 14
130 84.70 atmosphere 995.0 270 > th dose independent rect. 17 10
136 84.74 precipitation 0.1 270 < th dose independent rect. 7 6
138 84.74 precipitation 0.1 270 < th dose dependent rect. 7 6
140 84.79 radiation 40.0 10 < th dose independent rect. 12 8
142 84.80 humidity 50.0 270 > th dose independent rect. 17 10
147 84.83 temperature 10.0 270 > th dose independent rect. 7 6
148 84.83 atmosphere 995.0 270 > th dose independent rect. 7 6
149 84.83 atmosphere 1015.0 270 < th dose independent rect. 7 6
150 84.83 temperature 10.0 270 > th dose independent rect. 13 18
151 84.85 wind 9.0 270 < th dose independent rect. 7 6
198 85.08 radiation 40.0 90 < th dose dependent rect. 13 6
200 85.10 humidity 50.0 270 > th dose independent rect. 7 6
203 85.12 precipitation 0.1 270 < th dose independent rect. 12 6
204 85.12 precipitation 0.1 270 < th dose dependent rect. 12 6
205 85.13 precipitation 0.1 270 < th dose independent rect. 13 4
208 85.13 radiation 20.0 10 < th dose dependent sin 0 NA
209 85.13 precipitation 0.1 270 < th dose dependent rect. 13 4
214 85.16 wind 9.0 270 < th dose independent rect. 13 18
222 85.18 radiation 20.0 90 < th dose independent rect. 13 20
224 85.18 radiation 30.0 90 < th dose dependent rect. 23 20
227 85.22 atmosphere 1015.0 270 < th dose independent rect. 22 10
234 85.29 atmosphere 995.0 270 > th dose independent rect. 12 6
243 85.42 atmosphere 995.0 270 > th dose independent rect. 13 4
245 85.45 radiation 1.0 90 > th dose dependent rect. 7 7
279 85.59 radiation 10.0 10 > th dose independent sin 0 NA
288 85.69 temperature 10.0 270 > th dose dependent rect. 8 3
298 85.74 wind 9.0 270 < th dose independent rect. 2 15
304 85.78 precipitation 0.1 270 < th dose independent rect. 13 18
306 85.78 precipitation 0.1 270 < th dose dependent rect. 13 18
309 85.79 radiation 20.0 90 < th dose independent rect. 23 20
321 85.85 precipitation 0.1 270 < th dose independent rect. 17 9
323 85.85 precipitation 0.1 270 < th dose dependent rect. 17 9
328 85.90 humidity 50.0 270 > th dose independent rect. 13 5
347 86.02 radiation 20.0 10 < th dose dependent rect. 6 13
352 86.05 humidity 90.0 270 < th dose independent rect. 14 3
355 86.07 wind 1.0 90 > th dose dependent rect. 14 5
385 86.21 wind 1.0 10 > th dose independent rect. 14 6
395 86.30 radiation 30.0 90 < th dose dependent rect. 5 14
401 86.32 wind 9.0 10 < th dose independent rect. 20 18
409 86.35 atmosphere 995.0 270 > th dose independent rect. 2 15
411 86.36 radiation 40.0 10 < th dose dependent rect. 13 7
414 86.39 temperature 10.0 10 > th dose independent rect. 14 6
416 86.39 atmosphere 1010.0 10 < th dose independent rect. 14 6
425 86.39 temperature 10.0 10 > th dose independent rect. 20 18
426 86.39 atmosphere 995.0 10 > th dose independent rect. 20 18
438 86.44 atmosphere 1015.0 270 < th dose dependent rect. 14 3
459 86.50 precipitation 0.1 270 < th dose independent rect. 2 15
461 86.50 precipitation 0.1 270 < th dose dependent rect. 2 15
483 86.55 humidity 50.0 270 > th dose independent rect. 14 2
497 86.60 wind 9.0 270 < th dose dependent rect. 7 6
512 86.71 radiation 10.0 270 > th dose independent rect. 9 2
530 86.73 precipitation 0.1 10 < th dose independent rect. 14 6
531 86.73 precipitation 0.1 10 < th dose dependent rect. 14 6
555 86.81 radiation 10.0 90 > th dose independent sin 1 NA
565 86.86 radiation 40.0 90 < th dose independent rect. 14 18
604 86.92 humidity 50.0 270 > th dose independent rect. 8 3
621 87.00 atmosphere 1015.0 270 < th dose independent rect. 8 14
624 87.02 atmosphere 1015.0 270 < th dose dependent rect. 13 5
639 87.08 atmosphere 995.0 10 > th dose independent rect. 14 6
648 87.13 precipitation 0.1 10 < th dose independent rect. 20 18
650 87.13 precipitation 0.1 10 < th dose dependent rect. 20 18
655 87.16 atmosphere 995.0 270 > th dose independent rect. 13 18
668 87.22 wind 1.0 270 > th dose independent rect. 13 18
671 87.23 humidity 50.0 10 > th dose independent rect. 14 6
677 87.26 precipitation 0.1 270 < th dose independent rect. 8 3
678 87.26 precipitation 0.1 270 < th dose dependent rect. 8 3
701 87.30 temperature 10.0 270 > th dose independent rect. 8 3
702 87.30 atmosphere 995.0 270 > th dose independent rect. 8 3
703 87.30 atmosphere 1015.0 270 < th dose independent rect. 8 3
704 87.30 wind 1.0 270 > th dose independent rect. 7 6
712 87.30 temperature 10.0 270 > th dose independent rect. 11 21
713 87.31 wind 9.0 270 < th dose independent rect. 8 3
716 87.31 radiation 40.0 10 < th dose independent rect. 14 18
752 87.44 temperature 30.0 270 < th dose independent rect. 17 9
768 87.49 humidity 50.0 270 > th dose independent rect. 13 18
777 87.53 radiation 1.0 10 > th dose dependent rect. 8 6
778 87.54 radiation 20.0 10 > th dose independent rect. 16 22
787 87.56 wind 9.0 270 < th dose dependent rect. 8 14
822 87.62 wind 9.0 10 < th dose independent rect. 14 6
838 87.68 radiation 30.0 10 < th dose dependent rect. 21 23
840 87.69 wind 1.0 270 > th dose independent rect. 17 9
869 87.77 temperature 10.0 10 > th dose independent rect. 8 6
871 87.77 atmosphere 995.0 10 > th dose independent rect. 8 6
872 87.77 atmosphere 1015.0 10 < th dose independent rect. 8 6
876 87.77 temperature 10.0 10 > th dose independent rect. 14 18
879 87.78 radiation 20.0 10 < th dose independent rect. 23 21
897 87.80 radiation 30.0 10 < th dose dependent rect. 23 21
901 87.81 radiation 20.0 90 < th dose independent rect. 1 18
911 87.84 temperature 10.0 1440 > th dose independent rect. 15 6
914 87.84 temperature 10.0 1440 > th dose independent rect. 21 18
924 87.87 temperature 10.0 1440 > th dose independent rect. 9 6
935 87.87 temperature 10.0 1440 > th dose independent rect. 15 18
978 88.00 wind 1.0 270 > th dose independent rect. 8 3
991 88.04 atmosphere 1015.0 270 < th dose independent rect. 13 18