BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0118900 Os08g0118900|AK109749
(299 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0118900 Adenylate kinase family protein 499 e-141
Os03g0130400 Adenylate kinase, subfamily protein 153 1e-37
Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP trans... 78 7e-15
Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP trans... 74 9e-14
>Os08g0118900 Adenylate kinase family protein
Length = 299
Score = 499 bits (1284), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/243 (97%), Positives = 237/243 (97%)
Query: 57 PVAEMCPTXXXXXXPQWVVMGRPGPQKHAHAARLAEVLAVPYISMGTLVRQELSPASSLY 116
PVAEMCPT PQWVVMGRPGPQKHAHAARLAEVLAVPYISMGTLVRQELSPASSLY
Sbjct: 57 PVAEMCPTGGGGGGPQWVVMGRPGPQKHAHAARLAEVLAVPYISMGTLVRQELSPASSLY 116
Query: 117 KKIANSVNEGKLVPEDIIFGLLTKRLEEGYNKGETGFILDGIPRTHMQAEILDEIVDIDL 176
KKIANSVNEGKLVPEDIIFGLLTKRLEEGYNKGETGFILDGIPRTHMQAEILDEIVDIDL
Sbjct: 117 KKIANSVNEGKLVPEDIIFGLLTKRLEEGYNKGETGFILDGIPRTHMQAEILDEIVDIDL 176
Query: 177 VLNFKCADNCFMKRRFGGDICPHCGQLFDFSKTASSDRNPSLGSCTWPSQVQHAAVLGLE 236
VLNFKCADNCFMKRRFGGDICPHCGQLFDFSKTASSDRNPSLGSCTWPSQVQHAAVLGLE
Sbjct: 177 VLNFKCADNCFMKRRFGGDICPHCGQLFDFSKTASSDRNPSLGSCTWPSQVQHAAVLGLE 236
Query: 237 DSRMEKMRAYAEQTKLLEDYYRKQRKLMELKTSARPGETWQGLVAALHLQHLDASPTPHK 296
DSRMEKMRAYAEQTKLLEDYYRKQRKLMELKTSARPGETWQGLVAALHLQHLDASPTPHK
Sbjct: 237 DSRMEKMRAYAEQTKLLEDYYRKQRKLMELKTSARPGETWQGLVAALHLQHLDASPTPHK 296
Query: 297 LTM 299
LTM
Sbjct: 297 LTM 299
>Os03g0130400 Adenylate kinase, subfamily protein
Length = 293
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 7/222 (3%)
Query: 72 QWVVMGRPGPQKHAHAARLAEVLAVPYISMGTLVRQELSPASSLYKKIANSVNEGKLVPE 131
QWV +G PG K +A+RL+ +L VP+I+ G LVR EL+ + L ++A VN+GKLV +
Sbjct: 62 QWVFLGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPLSVQLAEIVNQGKLVSD 121
Query: 132 DIIFGLLTKRLEEGYNKGETGFILDGIPRTHMQAEILDEIVDIDLVLNFKCADNCFMKRR 191
+II LL+KRL++G +GE+GFILDG PRT QAEILD + DID+V+N K ++ +++
Sbjct: 122 EIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGVTDIDMVVNLKLREDVLVEKC 181
Query: 192 FGGDICPHCGQLFDFSKTASSDRN---PSLGSCTWPSQVQHAAVLGLEDSRME----KMR 244
G IC CG+ F+ + N P + P + ++ D E +++
Sbjct: 182 LGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNNCMSKLITRADDTEEVVRNRLQ 241
Query: 245 AYAEQTKLLEDYYRKQRKLMELKTSARPGETWQGLVAALHLQ 286
Y + ++ +E +YR+Q KL+E E+W L+ L+L+
Sbjct: 242 IYNDMSQPVEGFYRQQGKLLEFDLPGGIPESWPKLLHVLNLE 283
>Os12g0236400 Adenylate kinase A (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 241
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 19/219 (8%)
Query: 74 VVMGRPGPQKHAHAARLAEVLAVPYISMGTLVRQELSPASSLYKKIANSVNEGKLVPEDI 133
+++G PG K + + + + +++ G ++R ++ + L K ++++G+LV +D+
Sbjct: 32 ILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDL 91
Query: 134 IFGLLTKRLEEGYNKGETGFILDGIPRTHMQAEILDEIV-----DIDLVLNFKCADNCFM 188
+ G++ + +++ + GFILDG PRT +QA+ LDE++ ID VLNF D
Sbjct: 92 VVGIIDEAMKK--TSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILE 149
Query: 189 KRRFGGDICPHCGQLFDFSKTASSDRNPSLGSCTWPSQVQH----AAVLGLEDSRMEKMR 244
+R G I P G+ + + + P L T +Q AAVL SR+E
Sbjct: 150 ERITGRWIHPSSGR--SYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVL---KSRLE--- 201
Query: 245 AYAEQTKLLEDYYRKQRKLMELKTSARPGETWQGLVAAL 283
A+ QTK + DYY K+ + L P E + AL
Sbjct: 202 AFHVQTKPVIDYYTKKGIVANLHAEKPPKEVTVEVQKAL 240
>Os11g0312400 Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase)
Length = 243
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 111/213 (52%), Gaps = 19/213 (8%)
Query: 72 QWVVMGRPGPQKHAHAARLAEVLAVPYISMGTLVRQELSPASSLYKKIANSVNEGKLVPE 131
+ +++G PG K + + + + +++ G ++R ++ + L K ++++G+LV +
Sbjct: 32 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSD 91
Query: 132 DIIFGLLTKRLEEGYNKGETGFILDGIPRTHMQAEILDEIVD-----IDLVLNFKCADNC 186
D++ G++ + +++ + GFILDG PRT +QA+ LDE+++ +D VLNF D+
Sbjct: 92 DLVVGIIDEAMKK--PSCQKGFILDGFPRTVVQAQKLDEMLEKKGTKVDKVLNFAIDDSI 149
Query: 187 FMKRRFGGDICPHCGQLFDFSKTASSDRNPSLGSCTWPSQVQH----AAVLGLEDSRMEK 242
+R G I P G+ + +K A + P + T +Q A VL SR+E
Sbjct: 150 LEERITGRWIHPSSGRSY-HTKFAPP-KVPGVDDVTGEPLIQRKDDTAEVL---KSRLE- 203
Query: 243 MRAYAEQTKLLEDYYRKQRKLMELKTSARPGET 275
A+ +QT+ + DYY K+ + L P E
Sbjct: 204 --AFHKQTEPVIDYYSKKALVANLHAEKPPKEV 234
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,475,172
Number of extensions: 340569
Number of successful extensions: 880
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 879
Number of HSP's successfully gapped: 4
Length of query: 299
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 199
Effective length of database: 11,814,401
Effective search space: 2351065799
Effective search space used: 2351065799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)