Os04g0671100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0671100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.38 | 0.557 | 10.7 | 0.00732 | 0.769 | 0.248 | -1.22 | -2.42 | 0.188 | 10.7 | 21.86 | 2119 | -- | -- |
| 147.94 | 0.566 | 10.6 | 0.296 | 0.766 | 0.816 | -0.967 | -- | 0.278 | 10.9 | 19 | 10406 | -- | -- |
| 146.01 | 0.563 | 10.7 | 0.0857 | 0.759 | 0.242 | -- | -2.29 | 0.218 | 10.6 | 21.1 | 1880 | -- | -- |
| 151.76 | 0.574 | 10.7 | 0.239 | 0.75 | 0.847 | -- | -- | 0.253 | 10.6 | 18.9 | 10415 | -- | -- |
| 178.72 | 0.626 | 10.7 | 0.501 | -- | 0.429 | -- | -1.1 | 0.324 | -- | 20.8 | 1746 | -- | -- |
| 157.16 | 0.588 | 10.6 | 0.889 | 0.749 | -- | -0.99 | -- | 0.475 | 10.7 | -- | -- | -- | -- |
| 161.21 | 0.595 | 10.6 | 0.848 | 0.756 | -- | -- | -- | 0.471 | 10.6 | -- | -- | -- | -- |
| 180.35 | 0.628 | 10.7 | 0.628 | -- | 0.746 | -- | -- | 0.371 | -- | 18.9 | 10415 | -- | -- |
| 148.94 | 0.568 | 10.7 | -- | 0.759 | 0.967 | -- | -- | 0.234 | 10.6 | 14.4 | 47520 | -- | -- |
| 196.4 | 0.655 | 10.6 | 0.834 | -- | -- | -- | -- | 0.468 | -- | -- | -- | -- | -- |
| 180.19 | 0.628 | 10.6 | -- | 0.75 | -- | -- | -- | 0.377 | 10.5 | -- | -- | -- | -- |
| 184.84 | 0.633 | 10.7 | -- | -- | 0.945 | -- | -- | 0.234 | -- | 14.45 | 47520 | -- | -- |
| 214.77 | 0.684 | 10.7 | -- | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.36 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 134.01 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 4 | 134.38 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 12 | 18 |
| 6 | 134.46 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 21 | 135.04 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 18 |
| 28 | 135.38 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 31 | 135.55 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 36 | 135.70 | wind | 1.0 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 52 | 136.10 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 18 | 14 |
| 74 | 136.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 75 | 136.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 76 | 136.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 78 | 136.37 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 80 | 136.40 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 5 |
| 84 | 136.42 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 92 | 136.48 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 93 | 136.48 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 96 | 136.58 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 14 |
| 111 | 136.82 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 117 | 136.91 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 132 | 137.14 | wind | 1.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 159 | 137.39 | wind | 3.0 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 171 | 137.52 | wind | 3.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 183 | 137.58 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 188 | 137.67 | temperature | 15.0 | 10 | > th | dose dependent | sin | 15 | NA |
| 198 | 137.78 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 211 | 137.96 | wind | 1.0 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 218 | 138.00 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 221 | 138.01 | temperature | 30.0 | 10 | < th | dose dependent | sin | 15 | NA |
| 228 | 138.05 | wind | 1.0 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 242 | 138.11 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 243 | 138.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 13 | 18 |
| 244 | 138.13 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 4 |
| 245 | 138.13 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 16 |
| 254 | 138.17 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 255 | 138.18 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 257 | 138.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 262 | 138.21 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 8 |
| 281 | 138.32 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 293 | 138.38 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 303 | 138.42 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 305 | 138.42 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 14 |
| 309 | 138.44 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 312 | 138.44 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 11 |
| 328 | 138.48 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 331 | 138.49 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 362 | 138.55 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 16 |
| 366 | 138.56 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 10 |
| 426 | 138.67 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 432 | 138.68 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 445 | 138.71 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 481 | 138.78 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 503 | 138.83 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 518 | 138.85 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 580 | 138.98 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 583 | 138.99 | wind | 3.0 | 43200 | < th | dose independent | sin | 0 | NA |
| 587 | 138.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 621 | 139.05 | wind | 3.0 | 43200 | > th | dose independent | sin | 0 | NA |
| 624 | 139.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 630 | 139.06 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 633 | 139.06 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 638 | 139.06 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 650 | 139.08 | wind | 3.0 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 655 | 139.09 | humidity | 90.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 660 | 139.09 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 696 | 139.14 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 712 | 139.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 764 | 139.23 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 779 | 139.25 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 804 | 139.29 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 820 | 139.31 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 829 | 139.32 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 836 | 139.33 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 861 | 139.37 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 865 | 139.37 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 868 | 139.38 | wind | 3.0 | 14400 | < th | dose independent | rect. | 19 | 19 |
| 892 | 139.43 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 6 |
| 893 | 139.43 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 896 | 139.43 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 925 | 139.47 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 962 | 139.52 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 971 | 139.53 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 979 | 139.54 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 981 | 139.54 | wind | 3.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 991 | 139.55 | wind | 3.0 | 14400 | > th | dose independent | rect. | 20 | 18 |
| 999 | 139.56 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 6 |